FC928203

Overview
NameFC928203
Unique NameFC928203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHESM (Oligoribonuclease OS=Shewanella sp. (strain MR-4) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ +VDR++EIA ++TD +L    +GP + IHQ+ E L +M +W Q HH  SGL ++V  S + E +A  Q + F+++ V      + GNSV  D  FL +YM +L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_FRATW (Oligoribonuclease OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_FRATO (Oligoribonuclease OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_FRATH (Oligoribonuclease OS=Francisella tularensis subsp. holarctica (strain LVS) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_FRATF (Oligoribonuclease OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=orn PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL ++  +I+EIA IITD  L    E   + I+Q  E L +M EWC   H  +GLT++V  S ++   AE+Q++EF++K V   +  L GNS++ D  FL KYMP++     + ++DV+++K L   W
Sbjct:    7 LIWIDLEMTGLDVDSCKIIEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCGNSIWQDRRFLAKYMPNIDEYCHYRMLDVTTLKLLNQYW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_PSESM (Oligoribonuclease OS=Pseudomonas syringae pv. tomato GN=orn PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  212 KMPLVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            K  L+WIDLEMTGL  + D I+E+A IITD +L    EGP + +HQ+ E L  M EW    H  SGLT++V  S ++  +AE Q + F+K  V   +  + GNS+  D  FL ++MP L + F +  +DVS++K L   W
Sbjct:    4 KQNLIWIDLEMTGLDPDTDVIIEMATIITDSELNTLAEGPVIAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTISMADAEAQTLAFIKLWVPERSSPICGNSICQDRRFLYRHMPALENYFHYRNLDVSTLKELAARW 143          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_METCA (Oligoribonuclease OS=Methylococcus capsulatus GN=orn PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL  + D I+EIA I+TDG+L    EGP L IHQ +  LD M +W +  H  SGLTE+V  S + E EAE   + FV + V      + GNS+  D  FL + MP L + F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLDPQNDAIIEIATIVTDGQLNVLAEGPVLAIHQPESVLDRMDDWNRKQHGESGLTERVRRSTIGEAEAEHLTLGFVSEWVPPNESPICGNSICQDRRFLARCMPRLEAYFHYRNLDVSTLKILVERW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHESA (Oligoribonuclease OS=Shewanella sp. (strain ANA-3) GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ +VDR++EIA ++TD +L    +GP + IHQ+ + L +M +W Q HH  SGL ++V  S + E +A  Q + F+++ V      + GNSV  D  FL +YM +L   F +  +DVS++K L   W
Sbjct:    8 LIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQMNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHEB8 (Oligoribonuclease OS=Shewanella baltica (strain OS185) GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ +VDRI+EIA ++TD +L    +GP + IHQ+ + L +M +W Q HH  SGL ++V  S  TE +A  + + F+++ V      + GNS+  D  FL +YM +L   F +  VDVS+IK L   W
Sbjct:    8 LIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFHYRNVDVSTIKELVKRW 144          
BLAST of FC928203 vs. ExPASy Swiss-Prot
Match: ORN_SHEB5 (Oligoribonuclease OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=orn PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.519e-25
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  221 LVWIDLEMTGLKIEVDRILEIACIITDGKLTKSVEGPDLVIHQTKECLDSMGEWCQNHHEASGLTEKVLHSALTEREAEKQVVEFVKKNVGTYTPLLAGNSVYVDFMFLKKYMPDLASLFSHVLVDVSSIKALCMPW 631
            L+WIDLEMTGL+ +VDRI+EIA ++TD +L    +GP + IHQ+ + L +M +W Q HH  SGL ++V  S  TE +A  + + F+++ V      + GNS+  D  FL +YM +L   F +  VDVS+IK L   W
Sbjct:    8 LIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFHYRNVDVSTIKELVKRW 144          
The following BLAST results are available for this feature:
BLAST of FC928203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
ORN_SHESM3.822e-2542.34Oligoribonuclease OS=Shewanella sp. (strain MR-4) ... [more]
ORN_FRATW3.822e-2541.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_FRATO3.822e-2541.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_FRATH3.822e-2541.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_FRATF3.822e-2541.61Oligoribonuclease OS=Francisella tularensis subsp.... [more]
ORN_PSESM4.992e-2542.14Oligoribonuclease OS=Pseudomonas syringae pv. toma... [more]
ORN_METCA4.992e-2545.26Oligoribonuclease OS=Methylococcus capsulatus GN=o... [more]
ORN_SHESA6.519e-2541.61Oligoribonuclease OS=Shewanella sp. (strain ANA-3)... [more]
ORN_SHEB86.519e-2543.07Oligoribonuclease OS=Shewanella baltica (strain OS... [more]
ORN_SHEB56.519e-2543.07Oligoribonuclease OS=Shewanella baltica (strain OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YO08FM1 TF Citrus clementina cDNA clone KN0AAP9YO08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928203 ID=FC928203; Name=FC928203; organism=Citrus clementina; type=EST; length=636bp
TGGACTCTCAAATGCATTCTCTGTGTTAGAGCTGGACGCTGACGACAGTC
AAGTCAAAATGCCTGCTGCTGCTTCTTCTTCCTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCCTGCAAATCAGTTGAGAGCAAAAGCAAAGCAAACAG
CTCTAGCAATTTGACTCTTGAAAACCAACAAAATTCTCAGACTCCCTTGG
AATTTGAGTACAAAATGCCCCTTGTGTGGATTGACTTGGAAATGACAGGT
TTGAAAATTGAAGTTGATCGAATACTGGAGATTGCTTGTATAATTACTGA
TGGCAAGTTGACAAAATCAGTGGAGGGACCTGATTTGGTTATCCATCAAA
CTAAAGAGTGTTTAGATAGCATGGGTGAATGGTGTCAAAATCATCATGAA
GCTAGTGGATTGACAGAAAAGGTGCTTCATAGTGCCCTGACTGAAAGAGA
AGCTGAAAAGCAGGTTGTAGAATTTGTCAAGAAAAATGTTGGTACATACA
CTCCTCTTCTTGCAGGGAATTCAGTGTATGTGGATTTTATGTTCTTAAAG
AAATACATGCCAGACTTAGCTAGTCTTTTCTCTCATGTACTTGTCGATGT
TAGCAGTATCAAGGCTTTATGCATGCCCTGGTATCC
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