FC928881

Overview
NameFC928881
Unique NameFC928881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.521e-21
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATD  +SFK+ +WFWMT     PS  +++I  W PS+ D    R PG G  TNI+NGGIECG   NAAV +RIGY+  +CG   +
Sbjct:  151 VATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNV 236          

HSP 2 Score: 24.2534 bits (51), Expect = 6.521e-21
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            L  + GD+LDCY QR +
Sbjct:  234 LNVAPGDNLDCYNQRNF 250          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.526e-21
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFC 243
            +ATD  +SFK+ +WFWMTA    PSC +++  +W PS+ D    R PGYG  TNI+NGGIECG+  N  V +RIG++  +C
Sbjct:  145 VATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYC 225          

HSP 2 Score: 23.8682 bits (50), Expect = 6.526e-21
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            L  + GD+LDCY QR +
Sbjct:  228 LNVAPGDNLDCYDQRNF 244          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.483e-21
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYF 231
            +ATD  +SFK+ +WFWMT     PSC +++   W PS+ D    R+PGYG  TNI+NGGIECG+  NA V +RIGY+
Sbjct:  152 VATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYY 228          

HSP 2 Score: 25.409 bits (54), Expect = 8.483e-21
Identity = 10/27 (37.04%), Postives = 17/27 (62.96%), Query Frame = 2
Query:  221 LGTLPLSVASLGFSTGDSLDCYYQRPY 301
            +G    +V+ +  + GD+LDCY QR +
Sbjct:  225 IGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.768e-20
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATD  +SFK+ +WFWMT     PS  +++I  W PS+ D    R+PGYG  TNI+NGGIECG   N AV +RIGY+  +CG   +
Sbjct:  151 VATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNV 236          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-20
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFC 243
            +ATDP +SFK+ +WFWMTA  P PS   ++  +W PS  D    R+PG+G  TNIVNGGIECG   ++ V +RIG++  +C
Sbjct:  221 VATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYC 301          

HSP 2 Score: 24.6386 bits (52), Expect = 1.856e-20
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  266 GDSLDCYYQRPY 301
            G++LDCY QRP+
Sbjct:  309 GNNLDCYNQRPF 320          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.309e-20
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFG 255
            ++TD V+SFK+ +WFWMTA    PSC ++++  W PS+ D    R+PGYG  TNI+NGGIECG   N A  +RIGY+  +C   G
Sbjct:  160 VSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLG 244          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.142e-20
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFC 243
            +ATD V+SFK+  WFWMT   P PSC  ++   W PS  D    RLPG+G  TNI+NGG+ECG+     V +RIG++  +C
Sbjct:  206 VATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYC 286          

HSP 2 Score: 26.5646 bits (57), Expect = 3.142e-20
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYGINLMAQSM 328
            L  S G++LDC  QRP+G  L+  ++
Sbjct:  289 LRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.311e-20
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGIQH 264
            +A+D  +SF +  WFWMT   P PSC  +   +W PS++D    R+PGYG  TNI+NGG+ECG   +  V +RIG++  +C   G+ +
Sbjct:  225 VASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSY 312          

HSP 2 Score: 27.335 bits (59), Expect = 5.311e-20
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPYG 304
            LG S   +LDCY QRP+G
Sbjct:  308 LGVSYDANLDCYSQRPFG 325          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.776e-20
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQ-RGNAAVHNRIGYFTTFCGKFGI 258
            +++DPV++F++ +WFWMTA  P PSC +++ ++W PS +D    RLPGYG  TNI+NGG ECG+        +R+GY+  +C  F +
Sbjct:  153 VSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRV 239          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.162e-18
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            ++T+P +SFK+ +WFWMT     PS  +++   W PS+ D    R+PGYG  TNI+NGGIECG   +  V +R+G++  +C  FG+
Sbjct:  220 LSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGV 305          
The following BLAST results are available for this feature:
BLAST of FC928881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHIP_TOBAC6.521e-2148.84Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIB_SOLLC6.526e-2149.38Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY8.483e-2151.95Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIQ_TOBAC1.768e-2048.84Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIA_SECCE1.856e-2049.38Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI8_ORYSJ2.309e-2049.41Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_VITVI3.142e-2048.15Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI12_ORYSJ5.311e-2042.05Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ8.776e-2043.68Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIX_PEA2.162e-1843.02Endochitinase OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CC12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928881 ID=FC928881; Name=FC928881; organism=Citrus clementina; type=EST; length=512bp
ATTGCTACTGATCCAGTACTATCATTCAAGTCCACACTCTGGTTCTGGAT
GACTGCTCCCCCCCCGATTCCATCATGCCGCGAACTCCTTATCGACGAAT
GGAAACCATCATCAAATGACGTAGACCCCCGCCGGCTTCCGGGATACGGT
CAAACCACAAATATAGTCAACGGTGGAATTGAATGTGGCCAACGTGGGAA
TGCAGCTGTACATAACCGTATTGGGTACTTTACCACTTTCTGTGGCAAGT
TTGGGATTCAGCACTGGTGACAGTCTTGATTGCTACTACCAACGACCTTA
TGGCATTAATCTGATGGCACAATCTATGTGATCATCAAGATCAACGTTTT
AATAAAATAATCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACA
CTTGTAAGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAAGT
AAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCACCAAAAAA
AAAAAAAAAAAA
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