FC928881

Overview
NameFC928881
Unique NameFC928881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.636e-18
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   19 LSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFCGKFGI 258
            ++F++ LWFWMT     PSC ++++ E++P   DV   R  G+G  TNIVNGG+EC + G+A V+NRIG++  +C   G+
Sbjct:  197 IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGV 276          

HSP 2 Score: 23.8682 bits (50), Expect = 4.636e-18
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  251 LGFSTGDSLDCYYQRPY 301
            LG   G +LDC +Q+P+
Sbjct:  274 LGVDVGPNLDCEHQQPF 290          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.076e-17
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPP-IPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYFTTFC 243
            +ATDPVLSF++ LWFWM       PSC E++  EW PS  D++  R PG+G  TNI+  G EC + G     NRI Y+  +C
Sbjct:  204 VATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYC 285          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.423e-17
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPIPSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIECGQRGNAAVHNRIGYF 231
            + +D  + FK+ LWFWMT   P PS  +++   W PSS D    R+PGYG  TNI++GG+ECG+   + V +RIGY+
Sbjct:  111 VTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYY 187          

HSP 2 Score: 23.0978 bits (48), Expect = 8.423e-17
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  269 DSLDCYYQRPY 301
            D+LDCY Q+P+
Sbjct:  189 DNLDCYNQKPF 199          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPI-PSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIEC-GQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDP ++FK+ LW WMTA  P  PS   ++  +W P+  D    R PGYG TTNI+ GG++C G  G A   +R+ ++  +C   G+
Sbjct:  231 VATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA---DRVAFYKRYCDVLGV 315          
BLAST of FC928881 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 IATDPVLSFKSTLWFWMTAPPPI-PSCRELLIDEWKPSSNDVDPRRLPGYGQTTNIVNGGIEC-GQRGNAAVHNRIGYFTTFCGKFGI 258
            +ATDP ++FK+ LW WMTA  P  PS   ++  +W P+  D    R PGYG TTNI+ GG++C G  G A   +R+ ++  +C   G+
Sbjct:  231 VATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA---DRVAFYKRYCDVLGV 315          
The following BLAST results are available for this feature:
BLAST of FC928881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI10_ORYSJ4.636e-1843.75Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR4.076e-1746.34Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA8.423e-1745.45Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ1.227e-1340.91Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.227e-1340.91Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CC12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928881 ID=FC928881; Name=FC928881; organism=Citrus clementina; type=EST; length=512bp
ATTGCTACTGATCCAGTACTATCATTCAAGTCCACACTCTGGTTCTGGAT
GACTGCTCCCCCCCCGATTCCATCATGCCGCGAACTCCTTATCGACGAAT
GGAAACCATCATCAAATGACGTAGACCCCCGCCGGCTTCCGGGATACGGT
CAAACCACAAATATAGTCAACGGTGGAATTGAATGTGGCCAACGTGGGAA
TGCAGCTGTACATAACCGTATTGGGTACTTTACCACTTTCTGTGGCAAGT
TTGGGATTCAGCACTGGTGACAGTCTTGATTGCTACTACCAACGACCTTA
TGGCATTAATCTGATGGCACAATCTATGTGATCATCAAGATCAACGTTTT
AATAAAATAATCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACA
CTTGTAAGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAAGT
AAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCACCAAAAAA
AAAAAAAAAAAA
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