FC928937

Overview
NameFC928937
Unique NameFC928937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: ILL3_ARATH (IAA-amino acid hydrolase ILR1-like 3 OS=Arabidopsis thaliana GN=ILL3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.291e-26
Identity = 51/83 (61.45%), Postives = 69/83 (83.13%), Query Frame = 3
Query:  117 WMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 365
            W++ +RR+IH+NPEL ++  +TS LIR ELD++G+ Y +PVA TG+V  IG+G PP VALRADMD+LPLQE+VEW++KSKI G
Sbjct:   40 WLVSVRRQIHENPELLFELHKTSALIRRELDELGVSYSYPVAKTGIVAQIGSGYPPVVALRADMDALPLQELVEWDHKSKIDG 122          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: ILL4_ORYSJ (IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp. japonica GN=ILL4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.643e-24
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   75 KKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFI--GTGEPPFVALRADMDSLPLQEMVEWEYKS 353
            ++LL  A+  E  GW+ G+RR+IHQ+PEL +QE  TS L+R+ELD +G+ Y  P+A TGVV  +    G  P  ALRADMD+LP+QEMVEWE+KS
Sbjct:    7 RELLEAARAPEFAGWLRGLRRRIHQHPELAFQEHRTSALVRAELDALGVAYVWPIAQTGVVATVAGAAGPGPVFALRADMDALPIQEMVEWEFKS 101          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: ILL8_ORYSJ (IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sativa subsp. japonica GN=ILL8 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.508e-24
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   81 LLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFI--GTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 365
            LL  A      GW+ G+RR+IHQ PEL +QE  TS+L+R+ELD +G+ Y  PVA TGVV  I  G G  P VALRADMD+LPLQE+V+WE+KS+  G
Sbjct:   44 LLAAAGAAGFAGWLSGLRRRIHQRPELAFQEVRTSELVRAELDAIGVPYAWPVARTGVVATIDGGAGAGPVVALRADMDALPLQELVDWEFKSQEKG 140          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: ILL3_ORYSJ (IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.888e-24
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 3
Query:   75 KKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFI--GTGEPPFVALRADMDSLPLQEMVEWEYKS 353
            ++LL  A+  E  GW+ G+RR+IHQ+PEL +QE  TS L+R+ELD +G+ Y  PVA TGVV  +    G  P   LRADMD+LP+QEMVEWE+KS
Sbjct:   11 RELLEAARAPEFAGWLRGLRRRIHQHPELAFQEHRTSALVRAELDALGVAYVWPVAQTGVVATVVGAAGPGPVFGLRADMDALPIQEMVEWEFKS 105          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: ILL5_ORYSJ (IAA-amino acid hydrolase ILR1-like 5 OS=Oryza sativa subsp. japonica GN=ILL5 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.816e-23
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 3
Query:   96 KRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFIGTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 365
            + +E   WM+G+RR+IH +PEL ++E  TS L+R EL+++G+  +  VA TGVV  +G+G PP VALRADMD+LP+QE+VEWE+KSK+ G
Sbjct:   29 RAEEERDWMVGVRRRIHAHPELAFREHHTSALVRDELERLGLTAR-AVAGTGVVADVGSGLPPVVALRADMDALPVQELVEWEHKSKVDG 117          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: ILL9_ORYSJ (IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp. japonica GN=ILL9 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.510e-23
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = 3
Query:   81 LLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFI---GTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 365
            LL  A+   +  W+ G+RR+IH++PEL ++E  TS+L+R+ELD +G+ Y+ PVA TGVV  I   G G+ P VALRADMD+LP+QE+V+WE+KS+  G
Sbjct:   39 LLAAAREPGMAEWLRGVRRRIHRHPELAFEEVRTSELVRAELDAIGVPYQWPVARTGVVATIAGGGGGDGPVVALRADMDALPVQELVDWEHKSQENG 136          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: ILL7_ORYSJ (IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.228e-21
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:   78 KLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFI----GTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 365
            +LL+ A+      W+ G+RR IH++PEL ++E  TS+L+R+ELD +G+ Y+ PVA TGVV  I    G G     ALRADMD+LPLQE+V+WE+KS+  G
Sbjct:   52 ELLSAARAPGFAAWLRGLRRSIHRHPELAFEEVRTSELVRAELDAIGVPYEWPVARTGVVATIAGGDGAGAGTVFALRADMDALPLQELVDWEHKSEESG 151          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: CBPX2_SULSO (Thermostable carboxypeptidase 2 OS=Sulfolobus solfataricus GN=cpsA2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   66 DIPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAV-TGVVGFIGTGEP-PFVALRADMDSLPLQEMVEWEYKSKIPG 365
            D+ +KL N  K  E+  W+I IRRKIH+NPEL Y+E+ TS+L+   L K+GI+ +  V + T VVG I   +P   VALRADMD+LP++E  + E+KSK+ G
Sbjct:    2 DLVEKLKNDVK--EIEDWIIQIRRKIHENPELSYKEYSTSKLVAETLRKLGIEVEEGVGLPTAVVGKIRGNKPGKTVALRADMDALPVEETSDVEFKSKVKG 101          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: CBPX1_SULSO (Thermostable carboxypeptidase 1 OS=Sulfolobus solfataricus GN=cpsA1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.028e-16
Identity = 47/102 (46.08%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   66 DIPKKLLNFAKRQELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAV-TGVVGFIGTGEP-PFVALRADMDSLPLQEMVEWEYKSKIPG 365
            D+ +KL N  +  E+  W+I IRRKIH+ PEL Y+E+ TS+L+   L K+G++ +  V + T VVG I   +P   VALRADMD+LP++E  + E+KSK+ G
Sbjct:    2 DLVEKLKNDVR--EIEDWIIQIRRKIHEYPELSYKEYNTSKLVAETLRKLGVEVEEGVGLPTAVVGKIRGSKPGKTVALRADMDALPVEENTDLEFKSKVKG 101          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: YTNL_BACSU (Uncharacterized hydrolase ytnL OS=Bacillus subtilis GN=ytnL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.819e-12
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  120 MIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFI-GTGEPPFVALRADMDSLPLQEMVEWEYKSKIPG 365
            +IGIRR +HQ PEL  +EFET+  I+  L + GI+ +     TGV   I G  E P +ALRAD+D+LP++E     Y SK  G
Sbjct:   41 LIGIRRHLHQYPELSKEEFETTAFIKKCLKEKGIQIRPTALKTGVFADIAGESEGPAIALRADIDALPIEEKTGLPYASKHKG 123          
The following BLAST results are available for this feature:
BLAST of FC928937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ILL3_ARATH6.291e-2661.45IAA-amino acid hydrolase ILR1-like 3 OS=Arabidopsi... [more]
ILL4_ORYSJ2.643e-2454.74IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sati... [more]
ILL8_ORYSJ4.508e-2456.70IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sati... [more]
ILL3_ORYSJ5.888e-2454.74IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sati... [more]
ILL5_ORYSJ3.816e-2354.44IAA-amino acid hydrolase ILR1-like 5 OS=Oryza sati... [more]
ILL9_ORYSJ6.510e-2352.04IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sati... [more]
ILL7_ORYSJ1.228e-2150.00IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sati... [more]
CBPX2_SULSO1.405e-1749.02Thermostable carboxypeptidase 2 OS=Sulfolobus solf... [more]
CBPX1_SULSO2.028e-1646.08Thermostable carboxypeptidase 1 OS=Sulfolobus solf... [more]
YTNL_BACSU8.819e-1245.78Uncharacterized hydrolase ytnL OS=Bacillus subtili... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3BC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928937 ID=FC928937; Name=FC928937; organism=Citrus clementina; type=EST; length=367bp
TTCATTTGCTCAATCCATGTCCTGTTAGATTCTCGTATGGCTCTTCAAGC
TCAAATGGGTTATCGGATATTCCAAAAAAGTTGCTTAATTTTGCAAAAAG
ACAAGAGCTTGTTGGCTGGATGATTGGTATCAGGAGAAAAATACATCAGA
ATCCAGAACTGGGCTATCAGGAATTTGAGACTAGTCAGCTTATTAGATCA
GAATTGGATAAAATGGGTATTAAATACAAACACCCGGTAGCAGTAACTGG
TGTTGTTGGTTTTATTGGGACTGGTGAGCCTCCTTTTGTTGCATTGAGAG
CAGATATGGATTCTCTTCCTCTGCAGGAAATGGTTGAGTGGGAGTACAAG
AGTAAAATTCCTGGGAA
back to top