FC928937

Overview
NameFC928937
Unique NameFC928937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: HIPO_CAMJE (Hippurate hydrolase OS=Campylobacter jejuni GN=hipO PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.819e-12
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 3
Query:  105 ELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFIGTG-EPPFVALRADMDSLPLQEMVEWEYKSK 356
            +L G    IR +IH+NPELG+ E  T++L+  +L + G +    +  TGVVG +  G     + LRADMD+LPLQE     YKSK
Sbjct:    9 DLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKEFGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSK 93          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: Y100_SYNY3 (Uncharacterized hydrolase sll0100 OS=Synechocystis sp. (strain PCC 6803) GN=sll0100 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.504e-11
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  102 QELVGWMIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFI-GTGEPP-FVALRADMDSLPLQEMVEWEYKSKIPG 365
            Q L+  ++ IRR +H +PEL  QE++T+  +   L   G+  +  +  TGVVG + G G+ P  +A+R DMD+LP++EMV   + S+ PG
Sbjct:    8 QTLLPRLVEIRRHLHAHPELSGQEYQTAAYVAGVLSSCGLHVEEAIGKTGVVGQLSGKGDDPRLLAIRTDMDALPIEEMVSLPFASRHPG 97          
BLAST of FC928937 vs. ExPASy Swiss-Prot
Match: YHAA_BACSU (Putative amidohydrolase yhaA OS=Bacillus subtilis GN=yhaA PE=3 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.351e-11
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  120 MIGIRRKIHQNPELGYQEFETSQLIRSELDKMGIKYKHPVAVTGVVGFIGTGEP-PFVALRADMDSLPLQEMVEWEYKSKIPG 365
            M+ IRR  H  PEL +QE +T+  I S  + +G+  +  V   GV+  I   EP P VALRAD D+LP+Q+  +  Y SK+PG
Sbjct:   21 MVEIRRHFHMYPELSFQEEKTAAFIASYYESLGVPIRTNVGGRGVLANIEGSEPGPTVALRADFDALPIQDEKDVPYASKVPG 103          
The following BLAST results are available for this feature:
BLAST of FC928937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
HIPO_CAMJE8.819e-1243.53Hippurate hydrolase OS=Campylobacter jejuni GN=hip... [more]
Y100_SYNY31.504e-1138.89Uncharacterized hydrolase sll0100 OS=Synechocystis... [more]
YHAA_BACSU3.351e-1143.37Putative amidohydrolase yhaA OS=Bacillus subtilis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3BC04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928937 ID=FC928937; Name=FC928937; organism=Citrus clementina; type=EST; length=367bp
TTCATTTGCTCAATCCATGTCCTGTTAGATTCTCGTATGGCTCTTCAAGC
TCAAATGGGTTATCGGATATTCCAAAAAAGTTGCTTAATTTTGCAAAAAG
ACAAGAGCTTGTTGGCTGGATGATTGGTATCAGGAGAAAAATACATCAGA
ATCCAGAACTGGGCTATCAGGAATTTGAGACTAGTCAGCTTATTAGATCA
GAATTGGATAAAATGGGTATTAAATACAAACACCCGGTAGCAGTAACTGG
TGTTGTTGGTTTTATTGGGACTGGTGAGCCTCCTTTTGTTGCATTGAGAG
CAGATATGGATTCTCTTCCTCTGCAGGAAATGGTTGAGTGGGAGTACAAG
AGTAAAATTCCTGGGAA
back to top