FC929069

Overview
NameFC929069
Unique NameFC929069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROYA (60S ribosomal protein L32 OS=Drosophila yakuba GN=RpL32 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROSI (60S ribosomal protein L32 OS=Drosophila simulans GN=RpL32 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROME (60S ribosomal protein L32 OS=Drosophila melanogaster GN=RpL32 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.387e-39
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+ KRKEIVERA QL V +TN  ARL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROPS (60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROPE (60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROMI (60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROAZ (60S ribosomal protein L32 OS=Drosophila azteca GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROAI (60S ribosomal protein L32 OS=Drosophila affinis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_DROSU (60S ribosomal protein L32 OS=Drosophila subobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = -1 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RL SQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
The following BLAST results are available for this feature:
BLAST of FC929069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_DROYA2.572e-3969.3060S ribosomal protein L32 OS=Drosophila yakuba GN=... [more]
RL32_DROSI2.572e-3969.3060S ribosomal protein L32 OS=Drosophila simulans G... [more]
RL32_DROME2.572e-3969.3060S ribosomal protein L32 OS=Drosophila melanogast... [more]
RL32_DROAC4.387e-3969.3060S ribosomal protein L32 OS=Drosophila acanthopte... [more]
RL32_DROPS5.729e-3968.4260S ribosomal protein L32 OS=Drosophila pseudoobsc... [more]
RL32_DROPE5.729e-3968.4260S ribosomal protein L32 OS=Drosophila persimilis... [more]
RL32_DROMI5.729e-3968.4260S ribosomal protein L32 OS=Drosophila miranda GN... [more]
RL32_DROAZ5.729e-3968.4260S ribosomal protein L32 OS=Drosophila azteca GN=... [more]
RL32_DROAI5.729e-3968.4260S ribosomal protein L32 OS=Drosophila affinis GN... [more]
RL32_DROSU7.483e-3968.4260S ribosomal protein L32 OS=Drosophila subobscura... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE08RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929069 ID=FC929069; Name=FC929069; organism=Citrus clementina; type=EST; length=712bp
TTTTTTTTTTTTTTTTTACTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAAACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATAAAAACCAATTTTTACTC
CTCCTCCTGGCTGCCCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAAGAATTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAGCCAATATTGGGCATCAGAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAACAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGATAGTTGAAACAACA
AAACATTCGAAA
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