FC929069

Overview
NameFC929069
Unique NameFC929069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 60/108 (55.56%), Postives = 73/108 (67.59%), Query Frame = -1
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K F+V NV +LE L MH +TY AEIAHN+S K R  I+ RA  L + VTN   RL
Sbjct:   19 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = -1
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  PNIGYGS+KKT+   P G+K ++V NV +L+ L++H ++Y AEIA +VS++KR EIV +A +L V VTN   +L
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = -1
Query:  266 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 589
            R  SDR   V ENWR+ KGIDS VRR+F+G +  P IGYGS+KKT+   P+G K  +V N+ +LE L MH ++Y AEIAHNVS+K R  ++ RA  L V VTN   RL
Sbjct:   20 RHHSDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = -1
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLGSQEEE 589
            R  SDR   VK +WRRP GIDS+VR++ KG   MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV RA +L + + N  ARL  + EE
Sbjct:   26 RHHSDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE   +  R   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELE--RLDPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = -1
Query:  281 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 589
            R +  R   + E WRRPKG  S++RRK K    MPN GYGS KK R   P+G+++ +V+N  +LE   +  +   A IA  V  +KR+EI+E+A +L +VV N
Sbjct:   30 RQEWHRYKKLGEKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WRRPKGIDS++R K KG    P+IG+ S +  R   P+G+++ ++HNV ELE   +  +   A IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELE--KLDPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = -1
Query:  329 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFL----MMHNRTYCAEIAHNVSTKKR 589
            R QSDR   V  +WR+PKGID RVRR+F+G + MP IGYGS+KKTR   P+G   F +HN   L       M       AEIA  VS++KR
Sbjct:   20 RHQSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of FC929069 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.211e-13
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = -1
Query:  281 WRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELEFLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 550
            WR+PKG DS++R K KG    P+IG+ S K  R   P+G+++ +V+NV +LE  ++ ++   A IA  V  KKR  I+ERA +L + V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLE--LIDSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
The following BLAST results are available for this feature:
BLAST of FC929069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_YEAST3.261e-2655.5660S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL1.239e-2552.7860S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA1.049e-2453.7060S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU8.312e-2249.1260S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_PYRFU1.518e-1548.8950S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO4.418e-1546.6750S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_METKA5.769e-1542.7250S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_PYRAB9.841e-1545.5650S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_TRIHA1.285e-1449.4560S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_THESM9.211e-1342.2250S ribosomal protein L32e OS=Thermococcus sibiric... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE08RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929069 ID=FC929069; Name=FC929069; organism=Citrus clementina; type=EST; length=712bp
TTTTTTTTTTTTTTTTTACTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAAACAACAAATTCAAAATATCATTCAGGTGACAAATACAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATAAAAACCAATTTTTACTC
CTCCTCCTGGCTGCCCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAAGAATTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAAATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAGCCAATATTGGGCATCAGAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAACAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGATAGTTGAAACAACA
AAACATTCGAAA
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