FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 62/178 (34.83%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAV 660
            +       E G + +  +   A  IAD+++T LGPK M K+L     G  + +TNDG  IL+ + + +PAAK +++IS+ QD+EVGDGTTSV++LAGE+L  AE  +  ++HP  +IS +R A     D ++  +       +   SD+M  I  +++++K +S+       +A+DAV
Sbjct:    9 VLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGG--IVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKAL----DDMISTLKKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAV 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query:  292 NDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSD-LMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLK 672
            NDGATIL  L I +PAAK LVDI+K QDDEVGDGTTSV +LAGELL+E++  +   +HP  I  G++ A + A   L +      +  ET K + L+K A T+L+SK+L+  KE F +L V AV  L+
Sbjct:    1 NDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKYFIEEGMHPQIITKGYKEALKLALQFLHENAHSVADKNETEKREMLIKCAQTSLNSKLLAHYKEFFSELVVQAVETLE 128          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 62/178 (34.83%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAV 660
            +       E G + +  +   A  IAD+++T LGP+ M K+L     G  + +TNDG  IL+ + + +PAAK +++IS+ QD+EVGDGTTSV++LAGE+L  AE+ +  ++HP  IIS +R A     D ++  + +     +T   +LM KI  + +++K +    +    +A+DAV
Sbjct:    8 VLSQNMKRESGRKVQSGNINAAKTIADIIRTCLGPRAMMKMLLDPMGG--IVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEQFLEQQMHPTVIISAYRKAL----DDMVNTLKEISTPVDTNDRELMLKIINSAINTKAIKLWADMACGIALDAV 179          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 68/194 (35.05%), Postives = 117/194 (60.31%), Query Frame = 1
Query:  145 ANEEK--GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLRE-AEKLVAAKIHPMTIISGFRMAAECARDALLQ--KVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLK---GSTI*SPSNY 702
            A++E+  G +A++++   A A+AD+++T LGPK M K+L     G  + +TNDG  IL+ + + +PAAK ++++S+ QD+EVGDGTT+V++LAGE+L + A  L+   IHP+ II   + A   A + + Q  K VD + +A      + K+   ++ +K +    E   +LA+DAV  ++   G T+    N+
Sbjct:   10 ASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGG--LVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAA-----MKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNF 196          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 60/188 (31.91%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  115 MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE-----CARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            MG   +   +     G +A++ +   A A+AD++++TLGP+ M K+L     G  + +TNDG  IL+ + + +P AK ++++S+  D+EVGDGTTSV++LAGE+L  AE  V   IHP  I+ G+  A +     C   AL+  V D++         +  +  + + +K  S+  +    +A+ AV+
Sbjct:    6 MGPIMVLNSKTQRSTGRQAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGG--IVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVVDVHDSER--------VKSLVQSCIGAKFSSRWNDIMIDMALKAVL 183          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 61/178 (34.27%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAV 660
            +       E G + +  +   A  IAD+++T LGPK M K+L     G  + +TNDG  IL+ + + +PAAK +++IS+ QD+EVG GTTSV++LAGE+L  AE  +  ++HP  +IS +R A     D ++  +       +   SD+M  I  +++++K +S+       +A+DAV
Sbjct:    9 VLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGG--IVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKAL----DDMISTLKKISIPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAV 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 64/180 (35.56%), Postives = 106/180 (58.89%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKV---VDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            +       E G + ++ +     AIAD+++T LGP+ M K+L     G  + +TNDG  IL+ + + +PAAK +++I++ QD+EVGDGTTSV+VLAGE+L  AE  +  +IHP  II  +R A E     L  ++   +D K+ A+   +D++K  + T   K + +  +   ++A+DAV
Sbjct:   10 VLSQNTKRESGRKVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGG--IVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQLDVKDKAK--MADVVKACVGT---KFIGKWSDLAVKIALDAV 182          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 56/179 (31.28%), Postives = 106/179 (59.22%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMR 666
            +       E G++A++A+   + A++++V +TLGP+ M K+L     G  + +TNDG  IL+ + +++PAAK ++++++VQD+EVGDGTTSV+++AGE++  A+  +   IHP  I++ +  A E      ++K+ +     +    D +  A   LSS I ++    +G+L  D  ++
Sbjct:   11 VLNQNTKRESGKKAQLANISASKAVSEIVTSTLGPRSMLKMLLDPMGG--IVMTNDGNAILREIDVNHPAAKSMIELARVQDEEVGDGTTSVIIMAGEMMSAAKPFIERDIHPSIIVTAYYRALE----ESIKKIEELAVPIDVNNDDQVNKA---LSSCIGTKFTSRWGKLITDLALK 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 59/172 (34.30%), Postives = 100/172 (58.14%), Query Frame = 1
Query:  154 EKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            +K  + +  S + A  I+ +++T LGP+ M K++ +  +   + +TNDG  IL+ L + +P+A+ L++++K QDDEVGDGTTSVV+LA E+L E   ++   +HP+ I      A E    A+    +    N ET     +KI   +++SKI +  K   G LA++AV ++
Sbjct:   15 DKPAQIQNESAIAAKTISSVIRTCLGPRAMQKMVLT--KINSIELTNDGNAILRELDVAHPSARSLIELAKTQDDEVGDGTTSVVLLAAEILNEMTYILDRDVHPIRICKALGRALEICIKAIDGAAISLDSNEET----KIKIINGSVASKICNILKVPIGNLALEAVKKV 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 59/186 (31.72%), Postives = 102/186 (54.84%), Query Frame = 1
Query:  115 MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLK 672
            M   +    +A   + + A   +   A  + D+++T LGPKG  K+L S G G ++ +T DG  +L  + I +P A ++  ++  QDD  GDGTTS V++ GELL++A+  ++  +HP  I  GF  A E A   L Q  V  + + ET    L+ +A T+L +K+ ++  +   +  VD+++ +K
Sbjct:    1 MAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVS-GAG-DIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQIKVSREMDRET----LIDVARTSLRTKVHAELADVLTEAVVDSILAIK 180          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPG_HUMAN3.938e-2434.83T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPH_TETTH6.717e-2449.22T-complex protein 1 subunit eta (Fragment) OS=Tetr... [more]
TCPG_XENLA6.717e-2434.83T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPG_YEAST1.146e-2335.05T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPG_THAWE3.334e-2331.91T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_MACFA3.334e-2334.27T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_DROME3.334e-2335.56T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPG_TETPY4.814e-2231.28T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_ENCCU3.120e-2134.30T-complex protein 1 subunit gamma OS=Encephalitozo... [more]
TCPZ_RABIT4.075e-2131.72T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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