FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 55/186 (29.57%), Postives = 101/186 (54.30%), Query Frame = 1
Query:  115 MGVERIFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLK 672
            M   +I    A   + + A   +   A  + D+++ TLGPKG  K+L S G G ++ +T DG  +L  + I +P A ++  ++  QD   GDGTTS V++ GELL++A+  ++  +HP  I  GF    + A+   L+ + + K   E  +  L+ +A T+L +K+ ++  +   +  VD+V+ ++
Sbjct:    1 MAAIKIANPGAEVTRSQAALAVNICAARGLQDVLRPTLGPKGALKMLVS-GAG-DIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGF----DVAKTKALEVLDEIKVQKEMKREILLDVARTSLQTKVHAELADILTEAVVDSVLAIR 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPQ_DICDI (T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 54/166 (32.53%), Postives = 98/166 (59.04%), Query Frame = 1
Query:  115 MGVERIFRDEANEEKG-ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 609
            +G+  + +D A    G + A + +      ++++ +T+LGP GM+K++       ++ VTND ATI++ L + +PAAK+LV  +++Q+ E+GDGT  VV L GE L++A  L+   +HP  II+GF  A    ++ +   +V N ++  T K ++ K   + ++SK
Sbjct:    2 LGLTDMLKDGAKHFAGKDEAILRNIDATKQLSEITRTSLGPNGMNKMI--INHLEKLFVTNDAATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEIITGFEKAGAKLQEIIESMIVYNLKDI-TDKKEVTKCLKSAIASK 164          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 57/153 (37.25%), Postives = 91/153 (59.48%), Query Frame = 1
Query:  202 IADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            IA ++ T++GP G +KI+ +   G++  +TND AT+L  L I +P  K+L+  SK Q+ E+GD T  V++LAGE L  AEKL+   ++   II GF +A +     L + VV   E  E+F++DL+K     +++K    + +   +L VDAV
Sbjct:   38 IASILLTSMGPSGRNKIIVNK-LGKKF-ITNDAATMLNELEIVHPVVKILIQASKQQEFEMGDNTNLVIILAGEFLNVAEKLLTLGLNVSEIIQGFNLANKFVMKTLDELVV---EKVESFETDLLKAVKPVIAAKQYGVE-DTIAKLVVDAV 184          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_ENCCU (T-complex protein 1 subunit delta OS=Encephalitozoon cuniculi GN=CCT4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 58/169 (34.32%), Postives = 92/169 (54.44%), Query Frame = 1
Query:  154 EKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            E+  + R + F  + ++   + T+LGP+G+DK++    + ++  VTNDGATILK L+  +P   +L  +S  QD+E GDGTTSVV+LAG LL     L+   +HP  I     +A +     +      ++   E  + DL+    T L SKI S      G++AV+A+
Sbjct:    4 ERLNQVRTSVFQASQSLLQTLSTSLGPRGLDKMVV---KDKKTVVTNDGATILKYLN-HHPIHGILSSMSATQDEECGDGTTSVVILAGCLLESISSLLERNVHPSVICDNLEIAKKIGLRYI------DRVKMECSEKDLISNVTTALCSKIASST----GEMAVEAI 158          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18
Identity = 49/136 (36.03%), Postives = 83/136 (61.03%), Query Frame = 1
Query:  202 IADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 609
            ++++ +T+LGP G +KI+      ++  +TND ATI++ L + +PAAK++VD ++ Q++E+GD    VVV  GELL +AE ++   + P+ I  G+ MA     + L +   D  E  E+ K +L+K   T +SSK
Sbjct:   38 LSEITRTSLGPNGKNKIV--VNHLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEK-ELIKAIRTCISSK 170          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 54/175 (30.86%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  145 ANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETF--KSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            A+  +G+ A + +      + +++KT LGP+G  K+L   G G ++ +T DG  +L  + I +P A ++   +  QDD  GDGTT+ V+  GELL+++E+ +   IHP  I  GF    E A+D  L  + + K+ ++    +  L+ IA T+L +K+ +   +   +  VDA++
Sbjct:   12 ADSRRGQ-ALLLNISAGKGLQNVLKTNLGPRGTLKML--VGGGGDIKLTKDGKVLLHEMQIQHPTAALIARTATAQDDITGDGTTTNVITIGELLKQSERYLQENIHPRIIAEGF----ELAKDRCLAFLEEFKQTSQDTLDRELLISIAKTSLRTKLPADLADQLTEQVVDALL 179          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  118 GVERIFRDEANEEKG-ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSK 609
            G  ++ +D A    G E A   +      +A   +T  GP GM+K++    R  ++ VTND ATIL+ L + +PAAK++V  S +Q+ EVGDGT  V+V AG LL  AE+L+   +    +ISG+ +A + A + L + V  + +N      ++  +  T++ SK
Sbjct:   10 GFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMV--INRLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCSAKNLRDV-DEVSSLLRTSIMSK 171          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH602_STRAL (60 kDa chaperonin 2 OS=Streptomyces albus G GN=groL2 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  163 ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            E AR     G   +AD VK TLGPKG + +L+   +    T+TNDG +I K + +++P     A+++ +++K  DD  GDGTT+  VLA  L+RE  + VAA  +PM +  G   A E    ALL++  D  E  E   S     A  T   +++++  +  G+  V  V
Sbjct:    9 EEARRGLERGMNQLADAVKVTLGPKGRNVVLEK--KWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPMALKRGIEKAVEAVSSALLEQAKD-VETKEQIASTASISAADTQIGELIAEAMDKVGKEGVITV 175          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH602_STRAW (60 kDa chaperonin 2 OS=Streptomyces avermitilis GN=groL2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 58/170 (34.12%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  163 ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            E AR     G   +AD VK TLGPKG + +L+   +    T+TNDG +I K + +++P     A+++ +++K  DD  GDGTT+  VLA  L+RE  + VAA  +PM +  G   A E    ALL++  D  E  E   S     A  T   +++++  +  G+  V  V
Sbjct:    9 EEARRGLERGMNQLADAVKVTLGPKGRNVVLEK--KWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPMALKRGIEKAVEAVSGALLEQAKD-VETKEQIASTASISAADTQIGELIAEAMDKVGKEGVITV 175          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH602_STRLI (60 kDa chaperonin 2 OS=Streptomyces lividans GN=groL2 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  163 ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNP----AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            E+AR     G   +AD VK TLGPKG + +L+   +    T+TNDG +I K + +++P     A+++ +++K  DD  GDGTT+  VLA  L++E  + VAA  +PM +  G   A E    ALL++  D  E  E   S     A  T   +++++  +  G+  V  V
Sbjct:    9 EKARRGLEGGMNQLADAVKVTLGPKGRNVVLEK--KWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGANPMALKRGIEKAVEAVSGALLEQAKD-VETKEQIASTASISAADTQIGELIAEAMDKVGKEGVITV 175          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPW_MOUSE6.506e-1929.57T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPQ_DICDI8.497e-1932.53T-complex protein 1 subunit theta OS=Dictyostelium... [more]
TCPQ_CANAL1.449e-1837.25T-complex protein 1 subunit theta OS=Candida albic... [more]
TCPD_ENCCU3.229e-1834.32T-complex protein 1 subunit delta OS=Encephalitozo... [more]
TCPQ_SCHPO5.508e-1836.03Probable T-complex protein 1 subunit theta OS=Schi... [more]
TCPZ_DICDI2.093e-1730.86T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPQ_MOUSE2.093e-1733.94T-complex protein 1 subunit theta OS=Mus musculus ... [more]
CH602_STRAL3.570e-1734.1260 kDa chaperonin 2 OS=Streptomyces albus G GN=gro... [more]
CH602_STRAW4.662e-1734.1260 kDa chaperonin 2 OS=Streptomyces avermitilis GN... [more]
CH602_STRLI6.089e-1733.5360 kDa chaperonin 2 OS=Streptomyces lividans GN=gr... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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