FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 80/182 (43.96%), Postives = 124/182 (68.13%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTI*SPSNY 702
            GE  R  + + A +IA++VK++LGP G+DK+L    G   +VT+TNDGATILK L +++PAAKVL +++ +QD EVGDGTTSVV++A ELL+ A++LV  KIHP ++ISG+R+A + A   + + ++ N +  E  +  L+  A T++SSKI+  + + F  + VDAV+ +K + I     Y
Sbjct:   14 GEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIG---DVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTD--ELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDIRGQPRY 190          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.482e-34
Identity = 76/167 (45.51%), Postives = 118/167 (70.66%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDA 657
            G+  R  +   A+AIA++VK++LGP G+DK+L    G   +V VTNDGATILK L +++PA KVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV  K+HP TII+G+R+A + A   + + +    ++    +  ++  A T++SSKI+  D + FG+L VDA
Sbjct:   18 GQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVG---DVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSIG--RQSVVNAAKTSMSSKIIGPDADFFGELVVDA 179          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 77/172 (44.77%), Postives = 116/172 (67.44%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLK 672
            G  A+  + +    +A+ V+TTLGPKGMDK+L  S G   ++ VTNDG TILK + I++PAAK+LV+++K Q+DEVGDGTT+ V++AGELL++AE L+  +IHP  I  G+R AAE A++ L    +D  +     +  LMK+AMT ++ K   + +E   +L VDAV +++
Sbjct:   20 GRDAQRMNILAGKILAETVRTTLGPKGMDKMLVDSLG---DIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDDIAIDASD-----RDTLMKVAMTAMTGKGTEKAREPLAELIVDAVKQVE 183          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 78/180 (43.33%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            + ++  +  +G    +++     AI D V+TTLGP+GMDK++  + R  +VT++NDGAT++K L I +PAA+ LVDI+K QD EVGDGTTSVV+LAGE L+ A+  +   IHP  II  FR A E A+  + +  VD K   E  +  L K A T+++SK+++  K+ F ++ VDAV  L
Sbjct:   11 LLKEGTDTSQGLPQLISNINACCAIVDTVRTTLGPRGMDKLIYQSER--QVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELSVDIK--PENMREFLEKCASTSMNSKLIASHKQFFSKMVVDAVQLL 186          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 82/174 (47.13%), Postives = 115/174 (66.09%), Query Frame = 1
Query:  148 NEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            N EK +  R A+ + A A+AD ++T+LGPKGMDK+++ T RG E+ ++NDG TILK + I +P AK+LV++S  QD E GDGTTSVV+L G LL  AEKL+A  IHP  I   F+ A + A + LL     +K  +   +++L++ A T+LSSKI+SQ       LAVD V+ L
Sbjct:   14 NREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIK-TARG-EILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGM---SKRISLQDRAELVRAASTSLSSKIVSQYSTFLAPLAVDCVLSL 182          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 78/172 (45.35%), Postives = 121/172 (70.35%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLK 672
            GE  R  + + A +IA++VK++LGP G+DK+L    G   +VT+TNDGATILK L +++PAAKVL +++ +QD EVGDGTTSVV++A ELL+ A++LV  KIHP ++ISG+R+A + A   + + ++ N +  E  +  L+  A T++SSKI+  + + F  + VDAV+ +K
Sbjct:   14 GEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIG---DVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTD--ELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVK 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 78/172 (45.35%), Postives = 121/172 (70.35%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLK 672
            GE  R  + + A +IA++VK++LGP G+DK+L    G   +VT+TNDGATILK L +++PAAKVL +++ +QD EVGDGTTSVV++A ELL+ A++LV  KIHP ++ISG+R+A + A   + + ++ N +  E  +  L   A T++SSKI+  + ++F  + VDAV+ +K
Sbjct:   14 GEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIG---DVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINAD--ELGRDCLTNTAKTSMSSKIIGINGDYFANMVVDAVLAVK 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 81/172 (47.09%), Postives = 118/172 (68.60%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            G  A+  + + A  IA+ V+TTLGPKGMDK+L  S G   ++ VTNDGATIL  + + +PAAK++V+++K QD E GDGTT+ VV+AGELLR+AE+L+   IHP  II G+ +AAE A++ L +  +  N ++ ET    L++IAMT+++ K     KE   +LAVDAV ++
Sbjct:   21 GRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLG---DIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIKVNPDDEET----LLRIAMTSITGKNAESHKELLAKLAVDAVKQV 185          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 82/182 (45.05%), Postives = 120/182 (65.93%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGSTI*SPSNY 702
            GE  R  + +   AIA++VK++LGP G+DK+L    G   +VTVTNDGATIL  L +++PA KVLV++++ QD EVGDGTTSVV++A ELLR A +LV  KIHP TII+G+R+A   A   +   +  + ++    K  L+ +A T++SSKI+  D + F  +AVDA++ +K S     + Y
Sbjct:   19 GEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIG---DVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLG--KESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKGETRY 195          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 76/174 (43.68%), Postives = 122/174 (70.11%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            GE  R  + + A + A+ VKT+LGP G+DK+L    G   +VT+TNDGATILK L +++PAAK+LV ++++QD+EVGDGTTSVV+LA  LL+ A++L++  +HP T+I+G+R+A   A   + + +  +    +  K+ L+ +A T +SSK+++ D + F Q+AVDA+M ++ S
Sbjct:   11 GESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVG---DVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQEHMAYDVN--KLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAVEVS 179          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPA_RAT5.482e-3443.96T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_CAEEL5.482e-3445.51T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
THSB_METTH7.160e-3444.77Thermosome subunit beta OS=Methanobacterium thermo... [more]
TCPH_DICDI7.160e-3443.33T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPD_ASHGO7.160e-3447.13T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPA_CRIGR7.160e-3445.35T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA1_MOUSE7.160e-3445.35T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
THSA_THEK89.351e-3447.09Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPA_SCHPO9.351e-3445.05T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_SCHMA9.351e-3443.68T-complex protein 1 subunit alpha OS=Schistosoma m... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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