FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 72/168 (42.86%), Postives = 114/168 (67.86%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            G  A+  + +    I + V++TLGPKGMDK+L    G   ++ VTNDG TILK + +++PAAK+L++++K Q+ EVGDGTT+ VV+AGELLR+AE+L+   +HP  +I G+++A + A++ L +  +D K +    K  L KIAMT+++ K   + KE  G++ V+AV
Sbjct:   19 GRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLG---DIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIAMDVKADD---KEILHKIAMTSITGKGAEKAKEKLGEMIVEAV 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.752e-32
Identity = 79/183 (43.17%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  130 IFRDEANEEK--GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECA---RDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            + RD+  + +  G  A  +  +    +A++V+T+LGP+G+DKIL S     E+TVTNDGATIL  + +++  AK+LV +SK QDDE+GDGTT VVVLAG LL +AE L+   IHP+ I  G+  A + A    DA+   V  + EN     ++L + A T+L SK++S+  +HF  +AVDAV+
Sbjct:   20 LVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDG--EITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENT----TNLFRSAKTSLGSKVVSKAHDHFANIAVDAVL 196          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31
Identity = 73/176 (41.48%), Postives = 116/176 (65.91%), Query Frame = 1
Query:  136 RDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            +D+    +G  A+ A+     A+A +++++LGPKGMDK+LQ  G   ++T+TNDGATIL+ + +DN  AK++V++S+ QD E+GDGTT VVV+AG LL +AE+ +   IHP+ I  G+ MA+  A +  L+++    E        L++  MTTLSSKI+++ K    ++AV AV+
Sbjct:   18 QDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQ--GPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEH-LERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVL 190          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 76/178 (42.70%), Postives = 118/178 (66.29%), Query Frame = 1
Query:  142 EANEEKGERA--RMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            +A ++K + A  R ++   A A++D ++T+LGP+GMDK++Q+     EVT+TNDGATILK +++ +PAAK+LV++S+ QD E GDGTTSVVV+AG LL+  EKL+   IHP  I   F+  +  A D L +    +     T +  L+K A T+L+SK++SQ       +AV+AV+++
Sbjct:   15 QAYKDKSKPADIRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANG--EVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEM---STPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKV 187          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 77/179 (43.02%), Postives = 120/179 (67.04%), Query Frame = 1
Query:  133 FRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            FRD+   EK +  R ++ + A A++D ++T+LGPKGMDK++++  +  E+ ++NDGATILK + + +PAA++LVD+S  QD E GDGTTSV +L G LL  AEKL+   IHP  I   F+ AA  + + LL+  + +K + +  K  L++ A T+LSSKI+SQ       LAV++V+++
Sbjct:   16 FRDK---EKPQEVRKSNILAARAVSDAIRTSLGPKGMDKMIKT--KNGEIIISNDGATILKHMAVLHPAARMLVDVSAAQDVEAGDGTTSVAILTGSLLGAAEKLLNKGIHPTLISESFQRAATRSAEVLLE--MSHKISLDD-KEALIRAASTSLSSKIVSQHSSLLSPLAVNSVLKV 186          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 76/178 (42.70%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            I ++      G  A  A+ +   AIA ++KTT GPKGMDK+L  S G   ++T+TN+GATIL  + + +PAAK+LV ISK Q+DE GDGT + V+ AGELL+EAEKL+   IHP  I+ G++ A   A + +++ + +     +  K  L  IA T+L+SK +++ +++F +LAV+AV
Sbjct:   18 ILKEGTQRSYGREALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLG---DITITNNGATILDKMDVAHPAAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDINIHPTIIVEGYKEALRKASE-VIESIAEPVSYDDVEK--LKLIAKTSLNSKAVAEARDYFAELAVEAV 189          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 75/180 (41.67%), Postives = 120/180 (66.67%), Query Frame = 1
Query:  130 IFRDEANEEK--GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            + R++ N+++  G  A  +  + A A+A+ ++T+LGP+G+DK+L S     +VT+TNDGATI++ + + +  AK++V++SK QD E+GDGTT VVVLAG LL EAEKL+   IHP+ I  GF +A + A + L    + +K   E  +  L++ A T+L SKI+++    F ++AVDAV+
Sbjct:   19 VMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDG--DVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETL--DSISDKFPVEN-RERLVETAQTSLGSKIVNRSLRQFAEIAVDAVL 193          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPB_ENCCU (T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi GN=CCT2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 80/176 (45.45%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  151 EEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMA-AECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG 675
            EE+G+ A+     G   + D++KTTLGPKGM K+L    +G+ V VTNDGA IL +L ID+P+A++L+  S  QD E GDGTTSV +LA  L++EA KL   ++HP  I+ G+RMA A+C  + +L  +     + E  K DL+K+  TTL SK+L  D E F ++ V+AV +L+G
Sbjct:   13 EERGDDAKRTILAGTDIVGDILKTTLGPKGMLKML----KGQHVNVTNDGAFILNNLMIDSPSARILIGSSTGQDWEEGDGTTSVAILASLLVKEAGKL---EMHPTKILRGYRMAQAKC--EEILSSI-----SFEATKEDLLKLVRTTLCSKVLRYDLERFCEICVNAVEKLEG 174          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 77/179 (43.02%), Postives = 117/179 (65.36%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVD-NKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            I R+      G  A+  + + A  IA+ V++TLGPKGMDK+L  S G   +V +TNDG TILK + +++PAAK++++++K QD+EVGDGTT+ VVLAGELL+ AE+L+  +IHP  I +G+R AAE A + L +  +  +K++ E  K    KIA T ++ K      +   ++AV+AV
Sbjct:   11 ILREGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLG---DVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIAIPISKDDDEILK----KIATTAMTGKGAEVAIDKLAEIAVNAV 182          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 78/184 (42.39%), Postives = 118/184 (64.13%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR---DALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQ---LAVDAV 660
            +F++  +   G  A   + + A+ +A+++K++LGP+G+DK+L  S G   +VT+TNDGATI+K + I +PAAK+LV+ +K QD EVGDGTTS VVLAG LL +AE+L+   +HP  II G++ A   A    D L  K+  N  ++ T K+ L KI  TT+SSK ++   E   +   L +DA+
Sbjct:    7 LFKEGTSRSSGRDALRNNILAAVTLAEMLKSSLGPRGLDKMLIDSFG---DVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEIIDQLSLKIDVNDLSSPTAKAQLKKIVSTTMSSKFIAGGAEEIDKIIDLVIDAI 187          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
THS_METTL8.752e-3242.86Thermosome subunit OS=Methanococcus thermolithotro... [more]
TCPE_SCHPO8.752e-3243.17T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPE_ARATH1.143e-3141.48T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPD_AEDTR1.493e-3142.70T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_DEBHA1.950e-3143.02T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
THSB_AERPE2.547e-3142.70Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
TCPE_CAEEL2.547e-3141.67T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPB_ENCCU2.547e-3145.45T-complex protein 1 subunit beta OS=Encephalitozoo... [more]
THSB_ARCFU4.344e-3143.02Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_SULAC4.344e-3142.39Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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