FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 71/176 (40.34%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  139 DEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHI-DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            D+    KG++  +A+     +IA  + T+LGP GMDKILQS  +  ++ VTNDGATILK + + +NP ++++V +S+ QD+E+GDGTTSVVVLA  LL +A+ L+   +HP+ I  GF +    A    ++ + +  E     K  +MK A T+L SKI+ +  E F ++  DAV+
Sbjct:   19 DKGCRIKGQQCILANIGVVRSIATFLSTSLGPTGMDKILQS--KDEDIVVTNDGATILKEMEMTENPISRLIVQLSESQDEEIGDGTTSVVVLASALLDQAQALLGQGVHPIKISEGFEVGLGHA----VEHLSEISEEISDLKETMMKAAKTSLGSKIVYKSLERFAEICTDAVL 188          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 75/176 (42.61%), Postives = 112/176 (63.64%), Query Frame = 1
Query:  148 NEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDAL--LQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            + +K  + R ++   A A+AD V+T+LGPKGMDK++Q   +G +VT+TNDGATILK + + +P+AK+LV++SK QD E GDGTTSVVV+AG LL    +L+   IHP  I   F+ A +   + L  + + V   +     +  L+  A T+L SK++SQ       ++VDAVMR+
Sbjct:   23 DRDKPAQIRYSNISAAKAVADAVRTSLGPKGMDKMIQDE-KG-DVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLGD-----RETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRV 191          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 75/175 (42.86%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  139 DEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            D   +EK +  R ++ V A A+AD ++T+LGPKGMDK++ S     EV ++NDGATIL++L + +PAAK+L +++K QD E GDGTTSV V+AG LL    +L+A  IHP  I   F +A   + + L+   V     + T +  L+K A T+L+SK++SQ   +   +AVDAV+
Sbjct:   17 DFDEKEKEKDVRTSNIVAARAVADAIRTSLGPKGMDKMIISPNN--EVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVLVSMSV---PVSLTDRVSLVKSATTSLNSKVVSQ-YTNLASIAVDAVL 185          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 72/184 (39.13%), Postives = 116/184 (63.04%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR---DALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            I ++ ++   G+ A   +     A+ + +K+T GP+GMDK+L  S G   ++T+TNDGATIL  + + +PAAK+LV I+K QD+E  DGT + V+LAGEL+++AE+L+  +IHP  I+SGF+ A E A    + + QKV  N  +       L K+AMT+L+SK ++  +E+   +   AV ++
Sbjct:   18 ILKEGSSRTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLG---DITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQKVSVNDMDI------LKKVAMTSLNSKAVAGAREYLADIVAKAVTQV 192          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 73/183 (39.89%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECAR---DALLQKVVDNKENAETFKSDLMKIAMTTLSSKILS--QDKEHFGQLAVDAV 660
            + ++      G  A   + + A+ +A+++K++LGP+G+DK+L  S G   +VT+TNDGATI+K + I +PAAK+LV+ +K QD EVGDGTTS VVLAG LL +A+ L+   IHP  II G++ A   +    D L  K+  +  N+   +  L KI  TT+SSK ++  ++ +    + +DAV
Sbjct:    8 LLKEGTQRSSGRDALKNNILAAVTLAEMLKSSLGPRGLDKMLIDSFG---DVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKIDVSNLNSLATRDQLKKIVYTTMSSKFIAGGEEMDKIMNMVIDAV 187          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 68/181 (37.57%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            I ++ ++   G+ A   +     A+ + +KTT GP+GMDK+L  S G   ++T+TNDGATIL  + + +PAAK+LV I+K QD+E  DGT + V+ +GEL+++AE+L+  +IHP  I+SG++ A E A   +  + +  K +    +  L K+A+T+LSSK ++  +EH   + V A+ ++
Sbjct:   18 ILKEGSSRTYGKEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLG---DITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTI--EEISTKVSVNDTEI-LRKVALTSLSSKAVAGAREHLADIVVKAITQV 192          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 70/162 (43.21%), Postives = 106/162 (65.43%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLM-KIAMTTLSSK 609
            I  +  N   G  A+ ++     A+A+ V+TTLGP+GMDK+L  S+G   EV +TNDGATIL+ + I++PAA++LV++S+ Q++EVGDGTT+  VL GELL  AE L+   +HP  I+ G+  AA  A+DA+   V+D      T   DL+ K+A ++++ K
Sbjct:   11 ILAEGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSG---EVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDDMVLD-----VTLDDDLLRKVAESSMTGK 164          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 70/182 (38.46%), Postives = 113/182 (62.09%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKI-LQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSD-LMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            I ++ ++   G+ A  A+     AI + +K+T GP+GMDK+ + S G   ++T+TNDGATIL  + + +P  K+LV I+K QD+E  DGT + V+LAGEL ++AE L+  +IHP  I+SG++ A E A    L+ + D  +      +D L K+A+T+L SK ++  +E+   L V AV ++
Sbjct:   17 ILKEGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMFVDSLG---DITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIA----LKTIQDIAQPVSINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV 191          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 71/178 (39.89%), Postives = 108/178 (60.67%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDK--EHFGQLAVDA 657
            + R+      G    + +   A  + +++K++LGPKG+DK+L     G++VT+TNDGATI+K++ + +P AK+L++ +K  D EVGDGTTSVVVLAG LL +AE L+  KIHP  II G+R A   + + LL+ + D     +  +  +  +  TTLSSK  S +   E    L +DA
Sbjct:    4 LLREGTQRSTGNEVILNNIAVAKILLEMLKSSLGPKGLDKMLVE---GQDVTITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLE-LLKNIADKISPED--RKIVHDLVYTTLSSKFFSTEHTLEKIINLVIDA 175          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 70/181 (38.67%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            I ++ ++   G+ A  A+     AI + +K+T GP+GMDK+L  S G   ++T+TNDGATIL  + + +P  K+LV I+K QD+E  DGT + V+LAGEL ++AE L+  +IHP  I+SG++ A E A    +Q++       +T    L K+A+T+L SK ++  +E+   L V AV ++
Sbjct:   17 ILKEGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMLVDSLG---DITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKT-IQEIAQPVTINDT--DVLRKVALTSLGSKAVAGAREYLADLVVKAVAQV 191          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPE_ENCCU5.310e-2940.34T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPD_TAKRU5.310e-2942.61T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_DICDI5.310e-2942.86T-complex protein 1 subunit delta OS=Dictyostelium... [more]
THSB_SULTO1.545e-2839.13Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSA_SULTO1.545e-2839.89Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THSB_SULAC2.018e-2837.57Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THS3_HALVO3.442e-2843.21Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
THSB_SULSH1.001e-2738.46Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
THSG_SULSO1.308e-2739.89Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
THSB_SULSO1.708e-2738.67Thermosome subunit beta OS=Sulfolobus solfataricus... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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