FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:760..1469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THELT (Glycogen synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.479e-31
Identity = 74/184 (40.22%), Postives = 109/184 (59.24%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            F IHN+ YQG F         LPA +  + D ++ Y +      IN++K GIL SD+V TVSP YAQE+ + E  G +LD ++R     + GI+NG+D  E+NP TDK I V YD   + + K + K  LQ E+ L V  ++P+IG I RL +QKG D++   + + +  ++Q +VLGTG K +
Sbjct:  166 FTIHNLGYQGVFNPGYMKFAGLPA-YLFNIDGLEFYGQ------INFLKGGILFSDIVTTVSPTYAQEIQT-EQFGEKLDGVLRLRAEDLYGILNGIDYSEYNPATDKRIYVNYDIDHI-EKKKMNKSELQKELNLQVRDDVPLIGMINRLVDQKGLDLIEKIVDYMMMFDIQFVVLGTGDKKY 340          

HSP 2 Score: 35.039 bits (79), Expect = 2.479e-31
Identity = 13/30 (43.33%), Postives = 18/30 (60.00%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            A+DW T L+P YLKT+Y+    +     VF
Sbjct:  137 AHDWQTGLVPVYLKTLYRTDPFFNRTATVF 166          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 84/213 (39.44%), Postives = 121/213 (56.81%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            T +LP+ L   K      G  +  +    IHNIAYQGR   ++F  + LP  +   F   D    PV G   N   AG+  +D V+TVSP Y  EL + E  G  L +IIR+   K  GIVNG+D +EWNP  D ++       Y  +++  +KP  K ALQ E+GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LG+G++
Sbjct:  460 TALLPVYL---KAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYD----PVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEG-GWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSSKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRR 664          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 84/213 (39.44%), Postives = 120/213 (56.34%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            T +LP+ L   K      G  +  +    IHNIAYQGR   ++F  + LP  +   F   D    PV G   N   AG+  +D V+TVSP Y  EL + E  G  L +IIR+   K  GIVNG+D +EWNP  D ++       Y  +++   KP  K ALQ E+GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LG+G++
Sbjct:  460 TALLPVYL---KAYYRDNGMMQYTRSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYD----PVGGEHANIFGAGLKMADRVVTVSPGYLWELKTTEG-GWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRR 664          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.282e-31
Identity = 72/184 (39.13%), Postives = 116/184 (63.04%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRS 685
            IHN+ YQG F  E      LP  +  + D I+ Y K      IN++K GI+ SD++ TVSP YA+E +  ++ G +L+ ++R   + + GI+NG+D +E+NPLTD  I V YD +T+ + K   K+ LQ E+GLP +R++P+ G I RL +QKG DI+A  + +    ++Q ++LGTG++ + +
Sbjct:  169 IHNLGYQGIFEPEYLRFAGLP-DYLYNIDGIEFYGK------INFLKGGIIFSDIINTVSPTYAKE-IQQKEYGEKLEGVLRARSSDLYGILNGIDYEEFNPLTDNKIYVNYDLNTI-EKKKENKKLLQKELGLP-ERDVPMFGMINRLVDQKGLDIMAEIMDYVSLFDIQFVLLGTGEEKYEN 342          

HSP 2 Score: 33.113 bits (74), Expect = 9.282e-31
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYK 99
            D+V V NDW T+LIP YLKT+++
Sbjct:  134 DIVHV-NDWQTALIPVYLKTVFR 155          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.049e-30
Identity = 75/192 (39.06%), Postives = 116/192 (60.42%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            P   F IHN+AYQG F+ + F  L LP+ + S    ++ YN+      I+++K G++ +D + TVSP YA+E+++ E  G  LD ++R     + GI+NG D Q W+P  D +I  +YD  T    K   K ALQ   GLP D  +PV+GF+GRL EQKG D++  A+P  + E +Q++ LG G++  +++L
Sbjct:  159 PATLFTIHNLAYQGVFSRQQFDALELPSAWWSPAA-LEFYNQ------ISFIKGGLVFADWLTTVSPTYAKEILTPEF-GCGLDGVLRGRSKRLTGILNGADYQRWDPRHDPFIEKRYD-QTCWSHKASNKLALQRRYGLPEDDTLPVLGFVGRLVEQKGIDLILGALPKLLAEKIQVVFLGEGEERHQNAL 341          

HSP 2 Score: 22.7126 bits (47), Expect = 2.049e-30
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 1
Query:   49 NDWHTSLIPCYL 84
            NDW T LIP +L
Sbjct:  141 NDWQTGLIPPFL 152          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CELJU (Glycogen synthase OS=Cellvibrio japonicus (strain Ueda107) GN=glgA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.475e-30
Identity = 72/184 (39.13%), Postives = 116/184 (63.04%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            P   F IHN+AY+G F+++ FG LNLP  F    + ++ Y +      +++MK G+  +D + TVSP YAQE+   E  G  LD +IR  +  + GI+NG+D  EWNP  DK++   Y+  T+ + K   K ALQ  +GL ++ ++P++GFIGRL +QKG D++   +P  ++++ Q++VLG+G
Sbjct:  160 PATLFTIHNLAYRGLFSYQAFGELNLPPAFWHH-ERLEFYGQ------MSFMKGGLAFADFITTVSPSYAQEIQLPEH-GYGLDGLIRYRQESLSGILNGIDTDEWNPGKDKHLAATYNRRTLGN-KTKNKLALQETLGLALNADVPLLGFIGRLVDQKGIDLILNQLPLLLEQDCQLVVLGSG 334          

HSP 2 Score: 22.3274 bits (46), Expect = 3.475e-30
Identity = 8/12 (66.67%), Postives = 8/12 (66.67%), Query Frame = 1
Query:   49 NDWHTSLIPCYL 84
            NDW T LIP  L
Sbjct:  142 NDWQTGLIPALL 153          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.672e-30
Identity = 70/183 (38.25%), Postives = 114/183 (62.30%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            F IHN+AYQG F+      L LP       + +F D         ++N++KAG++ +D + TVSP YA+E+ + +  GV LD ++R     + GI+NG+DV+EW+P TD+++  +Y A+  +  K   K ALQ E+GLP   ++P++  IGRL EQKG D++ AA+   +  ++Q+++LGTG+
Sbjct:  160 FTIHNLAYQGVFSKHVVPALGLPWDVFRYEAMEFHD---------QLNFLKAGLVFADALTTVSPTYAREIATPQG-GVGLDALLRHRARDLHGILNGIDVEEWDPATDRHLPARYSAAD-LSGKAACKSALQRELGLPERPDVPLVAMIGRLAEQKGLDLVVAALGELLARDLQLVLLGTGR 331          

HSP 2 Score: 25.0238 bits (53), Expect = 7.672e-30
Identity = 10/29 (34.48%), Postives = 14/29 (48.28%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            NDW T L+P  L+  +        A+ VF
Sbjct:  132 NDWQTGLVPFLLRREHARDAALAGARTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.986e-30
Identity = 69/190 (36.32%), Postives = 115/190 (60.53%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWR 703
            IHN+ YQG F  +      LP  +  + D ++ Y      R++N++K GI+ SD++ TVSP YA+E+ + E+ G +L+ ++R     + GI+NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + + +  ++QI+VLGTG + + ++   ++
Sbjct:  168 IHNLGYQGVFDPKYLSFAGLP-DYVFTIDGLEFY------RQLNFLKGGIVFSDVINTVSPTYAEEIQT-EEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLMLFDLQIVVLGTGDEQYENAFRKFQ 348          

HSP 2 Score: 34.6538 bits (78), Expect = 9.986e-30
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYK 99
            D+V V NDW T+LIP YLKT+Y+
Sbjct:  133 DIVHV-NDWQTALIPVYLKTVYR 154          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.986e-30
Identity = 69/190 (36.32%), Postives = 115/190 (60.53%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWR 703
            IHN+ YQG F  +      LP  +  + D ++ Y      R++N++K GI+ SD++ TVSP YA+E+ + E+ G +L+ ++R     + GI+NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + + +  ++QI+VLGTG + + ++   ++
Sbjct:  168 IHNLGYQGVFDPKYLSFAGLP-DYVFTIDGLEFY------RQLNFLKGGIVFSDVINTVSPTYAEEIQT-EEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLMLFDLQIVVLGTGDEQYENAFRKFQ 348          

HSP 2 Score: 34.6538 bits (78), Expect = 9.986e-30
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYK 99
            D+V V NDW T+LIP YLKT+Y+
Sbjct:  133 DIVHV-NDWQTALIPVYLKTVYR 154          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.204e-29
Identity = 69/190 (36.32%), Postives = 113/190 (59.47%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWR 703
            IHN+ YQG F  +      LP  +  + D ++ Y +      +N++K GI+ SD++ TVSP YA+E+ + E+ G +LD ++R     + GI+NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + +    ++QI+VLGTG + + ++   ++
Sbjct:  168 IHNLGYQGVFDPKYLSFAGLP-DYVYTIDGLEFYGQ------LNFLKGGIVFSDVINTVSPTYAEEIQT-EEYGEKLDGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLTLFDLQIVVLGTGDEQYENAFRKFQ 348          

HSP 2 Score: 34.6538 bits (78), Expect = 2.204e-29
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYK 99
            D+V V NDW T+LIP YLKT+Y+
Sbjct:  133 DIVHV-NDWQTALIPVYLKTVYR 154          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_THELT2.479e-3140.22Glycogen synthase OS=Thermotoga lettingae (strain ... [more]
SSY23_ORYSJ3.381e-3139.44Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
SSY23_ORYSI4.416e-3139.44Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
GLGA_FERNB9.282e-3139.13Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA2_NITOC2.049e-3039.06Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA_CELJU3.475e-3039.13Glycogen synthase OS=Cellvibrio japonicus (strain ... [more]
GLGA_ANADF7.672e-3038.25Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_THESQ9.986e-3036.32Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP19.986e-3036.32Glycogen synthase OS=Thermotoga petrophila (strain... [more]
GLGA_THEMA2.204e-2936.32Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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