FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:760..1469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOPS (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.611e-27
Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP 676
            PK  F IHN+AYQG+F  E    + LP +   S D ++ Y        I ++KAG+  +D + TVSP YA E + G + G+ L+ ++R     + GI+NG+D + W+P  D+ I   YD  T+  A+   K+ALQA  GL  +    + G I RL  QKG D+L   +P  + +  Q+ +LG G  P
Sbjct:  159 PKCVFTIHNLAYQGQFPSELLARIGLPER-AFSLDGVEYYGG------IGYLKAGLQLADRITTVSPSYALE-IQGSEAGMGLEGLLRLRAGQLSGILNGVDTKVWDPSADQLIPATYDVETI-GARARNKQALQARFGLRAESGALLFGVISRLSWQKGLDMLLEVLPGMLADGAQLALLGAGDAP 336          

HSP 2 Score: 27.335 bits (59), Expect = 5.611e-27
Identity = 11/27 (40.74%), Postives = 17/27 (62.96%), Query Frame = 1
Query:   22 YGEDVVFVANDWHTSLIPCYLKTMYKP 102
            Y  D++  A+DW T L+P YL+   +P
Sbjct:  132 YAPDILH-AHDWQTGLLPAYLRYSGRP 157          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_MYCMO (Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 82/220 (37.27%), Postives = 122/220 (55.45%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN-VQIIVLGTGKKPWRSSLNSW 700
            TGILPL L         K      K+ F IHN+ YQG F   +    LN   +  S    I      +     N+MKAGI+ SD+V TVS  Y +E +    +G+ L++++ K  + ++GI+NG+D   +NP  DKYI  KYD S   +AK + K ALQ E+ L  ++ I +IG I RL  QKG D++  ++ + +K+N +Q +VLGTG   + S+L S+
Sbjct:  138 TGILPLFLS------GEKNENSKLKVVFTIHNLQYQGVFGASNVLKYLNEKERSNSLLSEI------ISNDIFNFMKAGIISSDIVTTVSETYKEE-IKQPMQGMGLESVLNKYNSKLRGIINGLDYDIFNPSIDKYIEAKYDVSNYKEAKLINKIALQKELNLEQNKKIFLIGMISRLANQKGIDLVLNSLWNIVKDNDIQFVVLGTGDVNYESNLKSF 344          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 71/182 (39.01%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQ-FK-SSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F IHN+AYQG F  +    L LP + F+  + +F D         ++++MKAG+  +D + TVSP YA+E+++ E  G  LD ++R     + GI+NG+DV  W+P  D ++   +    +   K   K ALQ EVGLPV R+ P+ G + RL EQKG D++AAA+P  +  +VQ+++LG+G
Sbjct:  161 FTIHNLAYQGLFPKQVLPALGLPWEVFRWEAMEFFD---------QLSFMKAGLAFADALTTVSPTYAREILTPEG-GASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFTPGELA-GKAACKAALQREVGLPVRRDAPLAGLVTRLAEQKGIDLVAAALPALLARDVQVVLLGSG 331          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CLOAB (Glycogen synthase OS=Clostridium acetobutylicum GN=glgA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.306e-27
Identity = 73/201 (36.32%), Postives = 108/201 (53.73%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFG---LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN--SWRY 706
            K  F IHN+ YQG F     G    LN     +++  F DG         I++MK GIL SD + TVS  YA+E +     G  LD ++R     + GIVNG+D    NP TDK +   +D+ST+ + K   K  LQ  + LPV  NIP+IG + RL  QKG D+++  +   +++ +Q++VLGTG   + +     +W+Y
Sbjct:  158 KTIFTIHNLKYQGVFGKSVLGELLCLNEGYYNENALKFYDG---------ISFMKGGILFSDKLSTVSRTYAEE-IKDPYYGEHLDGLLRSRSYDLWGIVNGIDYDILNPETDKDLFFNFDSSTLYN-KTKNKIELQKMLNLPVSENIPMIGIVSRLVSQKGLDLISCVLEDLLQDGIQLVVLGTGDAKYENMFKYFAWKY 347          

HSP 2 Score: 30.4166 bits (67), Expect = 7.306e-27
Identity = 12/33 (36.36%), Postives = 17/33 (51.52%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            +   NDW T++IP  LK  Y+    Y   K +F
Sbjct:  129 IIQCNDWQTAIIPVLLKDHYRNYRNYNHIKTIF 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRATW (Glycogen synthase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.506e-27
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 9.506e-27
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRATT (Glycogen synthase OS=Francisella tularensis subsp. tularensis GN=glgA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.506e-27
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 9.506e-27
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRATM (Glycogen synthase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.506e-27
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 9.506e-27
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_FRAT1 (Glycogen synthase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.506e-27
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 2
Query:  116 KVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  K  F +HN+AYQG F    F  L+LP  F S  + ++ Y +      +++MKAG+  +D + TVSP YA+E+   E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        QI++LG+G K
Sbjct:  161 KAVKTVFTVHNLAYQGLFPMSVFAELDLPGIFLS-MNGLEFYGQ------VSFMKAGLYFADKITTVSPTYAKEIQIYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLIEAIGEITSRGGQIVLLGSGDK 340          

HSP 2 Score: 28.8758 bits (63), Expect = 9.506e-27
Identity = 12/30 (40.00%), Postives = 17/30 (56.67%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            ++DWH  L+P Y+K      G  K+ K VF
Sbjct:  139 SHDWHAGLVPAYIKASELASGK-KAVKTVF 167          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRGC (Glycogen synthase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.510e-27
Identity = 76/192 (39.58%), Postives = 107/192 (55.73%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFA----FEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK-----INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K    IHN+ +QG+F     +E FG+               GY +   G       +NWMKAGIL +D V TVSP YA E+ + E  G  LD I+R    K  GIVNG+D + +NP TD  +   +D S  +  K   K ALQ  VGLPV  ++P++G + RL  QKG D++   + +F++++VQII+LGTG
Sbjct:  157 KTVLTIHNLEFQGQFPDSMLWELFGV---------------GYERYADGTLRWNDCLNWMKAGILYADRVTTVSPSYAGEIRTPEF-GCNLDQILRMESGKLVGIVNGIDTEIYNPETDPLLAHHFDKSD-LSGKLENKRALQERVGLPVRDDVPLVGIVSRLTRQKGFDLVVEELHNFLQQDVQIILLGTG 331          

HSP 2 Score: 25.0238 bits (53), Expect = 9.510e-27
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            DV+ V +D+HT++IP  +K  Y     Y++ K V
Sbjct:  127 DVLHV-HDYHTAMIPFLVKEKYHWIQAYRNIKTV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CLOD6 (Glycogen synthase OS=Clostridium difficile (strain 630) GN=glgA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 83/217 (38.25%), Postives = 128/217 (58.99%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN 694
            TG+LPL L   +   + +G   + K  + IHN+ YQG F     + +L+LP ++  + D I+ Y        IN+MKAGI  +D ++TVSP YA E+ +    G +LD ++RK    +KGI+NG+D    +P  DK I V YD  ++ + K   K  LQ  +GL  D +IP+IG + RL  QKG D++A  +P  ++E++QI+VLGTG+  ++S  N
Sbjct:  140 TGMLPLILK--ERYATLEGYKNI-KTMYTIHNLQYQGVFDKHVLYDILDLPQKYFDNGD-IEYYGS------INFMKAGINFADKIITVSPTYANEIQTSF-YGEQLDGLLRKESGKLKGILNGIDYDLNDPAKDKDIFVHYDVDSI-NKKVENKLRLQDILGLKKDSSIPLIGIVSRLVSQKGFDLIAYMMPELMREDLQIVVLGTGEHQYQSMFN 344          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_RHOPS5.611e-2736.36Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_MYCMO6.598e-2737.27Glycogen synthase OS=Mycoplasma mobile GN=glgA PE=... [more]
GLGA_ANADE6.598e-2739.01Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_CLOAB7.306e-2736.32Glycogen synthase OS=Clostridium acetobutylicum GN... [more]
GLGA_FRATW9.506e-2736.70Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATT9.506e-2736.70Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRATM9.506e-2736.70Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_FRAT19.506e-2736.70Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_STRGC9.510e-2739.58Glycogen synthase OS=Streptococcus gordonii (strai... [more]
GLGA_CLOD61.470e-2638.25Glycogen synthase OS=Clostridium difficile (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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