FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:760..1469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA2_GEOMG (Glycogen synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.020e-25
Identity = 71/195 (36.41%), Postives = 109/195 (55.90%), Query Frame = 2
Query:  128 LFFCIHNIAYQGRFAFEDFGLLNL-PAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWR 703
            + F IHN+AYQG F  +      L P+ F  S D I+ Y +      IN +K  IL +D + TVS  Y  E++S   +G  L+ ++  R+  + GI+NG+D +EWNP  D+ I   Y + ++   K   K  LQ E+GL    +IP+IG +GR+ EQKG D++   +P F  E +Q+++LGTG       L+ +R
Sbjct:  163 VIFTIHNLAYQGVFPADALAQTGLDPSLF--SVDRIEFYGR------INLLKGAILAADAITTVSETYCHEILS-PGQGCGLEGVLERRQADLAGILNGLDSEEWNPSLDRRIFRNYSSKSLA-GKGADKRELQRELGLKAGASIPIIGMVGRIVEQKGIDLVIDLLPRFAAEELQLVILGTGDLRLMHQLHEFR 347          

HSP 2 Score: 21.9422 bits (45), Expect = 1.020e-25
Identity = 10/33 (30.30%), Postives = 15/33 (45.45%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V   +DW ++LIP  LK        +    V+F
Sbjct:  133 VIHCHDWQSALIPIILKYELGHDPFFNRTAVIF 165          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ELUMP (Glycogen synthase OS=Elusimicrobium minutum (strain Pei191) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.020e-25
Identity = 61/183 (33.33%), Postives = 103/183 (56.28%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK---INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            F IHN+AYQG++ +  F         K+ F  +D    P R      I+++K+GI+ +D V TVSP+YA+E+   E  G  ++ ++R  +    GI+NG+D   W+P  D  I   Y++ + +  K   K+ LQ  +GL V  + P++G + R++ QKG D++   +  + K+ VQ +V+GTG
Sbjct:  165 FTIHNMAYQGQYPYSTF--------IKTGFHTVDYV--PERFEYYGGISYLKSGIVYADYVNTVSPNYAKEITLDEKMGFGMEGLLRSRQDTFCGILNGLDTGVWDPEHDPLIPYSYESFSPVKGKAACKQFLQNMLGLEVSPSKPLVGIVSRMDYQKGLDLIPGVVNKY-KDKVQFVVVGTG 336          

HSP 2 Score: 34.6538 bits (78), Expect = 1.020e-25
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = 1
Query:   22 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            Y  D++  A+DW   L+P YLKT+YK    +   + +F
Sbjct:  129 YRPDIIH-AHDWQAGLLPAYLKTVYKTDAFFTRTRSLF 165          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRSV (Glycogen synthase OS=Streptococcus sanguinis (strain SK36) GN=glgA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.020e-25
Identity = 76/187 (40.64%), Postives = 104/187 (55.61%), Query Frame = 2
Query:  140 IHNIAYQGRFA----FEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK-----INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            IHN+ +QG+F     +E FG+               GY +   G       +NWMKAGIL +D V TVSP YA E+ + E  G  LD I+R    K  GIVNG+D   +NP TD  +   +D S  +  K   K ALQ  VGLPV  ++PV+G + RL  QKG D++   + + ++E+VQII+LGTG
Sbjct:  162 IHNLEFQGQFPDSMLWELFGV---------------GYERYADGTLRWNDCLNWMKAGILYADRVTTVSPSYASEIRTPEF-GCNLDQILRMESGKLVGIVNGIDTDIYNPETDPLLAHHFDKSD-LSGKLENKRALQERVGLPVRDDVPVVGIVSRLTRQKGFDLVVEELHNLLQEDVQIILLGTG 331          

HSP 2 Score: 22.3274 bits (46), Expect = 1.020e-25
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMY 96
            DV+ V +D+HT++IP  +K  Y
Sbjct:  127 DVLHV-HDYHTAMIPFLVKEKY 147          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_LACAC (Glycogen synthase OS=Lactobacillus acidophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.020e-25
Identity = 74/184 (40.22%), Postives = 106/184 (57.61%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVR-GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K    IHN+ +QG++  +      LP  F  ++D+ D  +  VR    +NWMK GIL +D V TVSP YA+E+ + E  G  LD I+R    K  GI+NG+D +++NP TD  I   YD    +  K   K ALQ E+ LP+  NIP+IG + RL  QKG  +L   + + ++ NVQI++LG G
Sbjct:  157 KTILTIHNLEFQGKYNAK-----TLPDFFGMNYDWFD--SGIVRMDNDVNWMKTGILYADRVTTVSPSYAREIQTVEF-GQGLDAILRMCSHKLTGILNGIDFEKYNPKTDPVIKKNYDVYH-LHHKSKDKIALQKELDLPIKPNIPLIGMVSRLTAQKGCQLLLDELDNILQFNVQIVILGNG 331          

HSP 2 Score: 23.483 bits (49), Expect = 1.020e-25
Identity = 11/32 (34.38%), Postives = 15/32 (46.88%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            V   ND+HT+ IP  L   +     YK  K +
Sbjct:  128 VLHCNDYHTAFIPFLLHEKWGFVDAYKGIKTI 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACHK (Glycogen synthase OS=Bacillus thuringiensis subsp. konkukian GN=glgA PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.020e-25
Identity = 70/184 (38.04%), Postives = 106/184 (57.61%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  + IHN+ +QG F+ E  + LL L  ++  S + ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G
Sbjct:  157 KTVYTIHNLQFQGVFSPEVMYDLLELGDEYFHS-EQLEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYDADSLYE-KNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSG 331          

HSP 2 Score: 27.7202 bits (60), Expect = 1.020e-25
Identity = 10/33 (30.30%), Postives = 19/33 (57.58%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V  ++DWHT+++   L+  Y+    Y+  K V+
Sbjct:  128 VLHSHDWHTAMVNFLLREKYQDNPSYEHIKTVY 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_BACC4 (Glycogen synthase OS=Bacillus cereus (strain B4264) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.020e-25
Identity = 70/184 (38.04%), Postives = 104/184 (56.52%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K  + IHN+ +QG F  E  + LL L  ++  S   ++ Y        +N+MK GI+ SD +  VSP Y +E +  E  G +LD ++RK   K  GIVNG+D   +NP TD YI  +YDA ++ + K   K ALQ   GLP   + P+I  + RL +QKG D++       ++E+VQ I+LG+G
Sbjct:  157 KTVYTIHNLQFQGVFPPEVMYDLLELGDEYFHSKQ-LEFYGN------VNFMKGGIIASDQITAVSPTYKEE-IQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYIKAQYDAESLYE-KSENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSG 331          

HSP 2 Score: 28.8758 bits (63), Expect = 1.020e-25
Identity = 10/33 (30.30%), Postives = 20/33 (60.61%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            V  ++DWHT+++   L+  Y+   +Y+  K V+
Sbjct:  128 VLHSHDWHTAMVNFLLREKYQDNPLYERIKTVY 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOP5 (Glycogen synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.327e-25
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSF--DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            P   F +HN+A+QG+F  E  G L LP    SSF  D ++ Y        I +MKAG+  SD + TVSP YA E+ + E  G+ LD ++R+    + GI+NG+D + WNP TDK I   YD  T + A+   K AL+   GL  + +  +IG I RL  QKG D+L   +P  + E +Q+ +LG G
Sbjct:  159 PATVFTVHNLAFQGQFPRELLGTLGLPP---SSFGVDGVEYYGA------IGYMKAGLQLSDRITTVSPAYALEIQAPE-AGMGLDGLLRQRSHHLTGILNGIDEKVWNPATDKRIAATYDVKT-LPARGANKAALRERFGLASETDRLLIGVISRLSWQKGLDLLLETLPLLLSEGIQLALLGAG 333          

HSP 2 Score: 21.1718 bits (43), Expect = 1.327e-25
Identity = 8/19 (42.11%), Postives = 10/19 (52.63%), Query Frame = 1
Query:   46 ANDWHTSLIPCYLKTMYKP 102
            A+DW   L   YL+   KP
Sbjct:  139 AHDWQAGLTAAYLRYSDKP 157          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_PETMO (Glycogen synthase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glgA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.327e-25
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNI--IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            IHNI YQG F  E      LP  +  + + ++ Y K      +N +K GIL S+++ TVSP YA+E+ S E+ G  L+ I  +R   + GI+NG+D   ++PL D +I   +      + K   K +LQ  +GL  D NI +I FIGRL EQKG D+++  +   +  ++Q ++LGTG K +
Sbjct:  166 IHNIGYQGLFNPEVLNQAGLP-NYLFNMNALEYYGK------VNVLKGGILFSNIINTVSPTYAKEIQS-EEYGYGLEGILKVRSEDLFGILNGIDYSIYDPLKDPHI---FHPIESYEDKLKNKTSLQEYLGLTKDENITLISFIGRLFEQKGIDLISKIMDLLLLNDIQFVLLGTGDKKY 336          

HSP 2 Score: 36.1946 bits (82), Expect = 1.327e-25
Identity = 15/28 (53.57%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            NDWHTSLIP YLKT Y    + K    +
Sbjct:  136 NDWHTSLIPVYLKTHYLQDNILKKIATI 163          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_RHOFD (Glycogen synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.726e-25
Identity = 73/184 (39.67%), Postives = 101/184 (54.89%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            P   F IHN+AYQG FA  +   L LP   KS FD IDG+       K+++MKA +  +D + TVSP YA+E +S E +G  LD ++R+    + GI+NG+D   WNP TD  +   YD    +  K L K ALQ + GL    N  V G + RL EQKG  +L   +   ++   Q+ +LG G
Sbjct:  169 PATVFTIHNLAYQGLFAAAEVTRLGLP---KSWFD-IDGFEF---FGKVSFMKAALRYADRITTVSPTYARE-ISSEAQGCGLDGLLRERANSLSGILNGVDDLIWNPATDALLPAPYDEHK-LQGKTLAKRALQTKFGLEPRANALVFGAVSRLTEQKGLHLLPQVLADMVQRGGQLALLGQG 343          

HSP 2 Score: 24.2534 bits (51), Expect = 1.726e-25
Identity = 9/29 (31.03%), Postives = 14/29 (48.28%), Query Frame = 1
Query:   19 PYGEDVVFVANDWHTSLIPCYLKTMYKPK 105
            P+    V   +DWH+ L P Y++     K
Sbjct:  137 PHWRPDVIHCHDWHSGLTPTYVRAFAAAK 165          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ACIBL (Glycogen synthase OS=Acidobacteria bacterium (strain Ellin345) GN=glgA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.727e-25
Identity = 67/187 (35.83%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR-KTG-IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            K+ F IHN+ YQG F  E   LL LP      +D          G K+N++K  ++ +D V TVS  YA E+ + E  G  L+ ++R ++G + GI+NG+D  EW+P TD++I  K+ A + + AK   K  L  E GLP +  +PV+G + R   QKG D++        +E    +VLG+G K +
Sbjct:  160 KIVFTIHNMGYQGLFPGEILPLLMLP------WDLFTLTKMEFYG-KVNFLKGALVYADFVTTVSRRYALEIQTAE-YGFGLEGVLRGRSGTVAGILNGVDYSEWSPETDRFIAAKFSADS-LAAKAQDKADLLREFGLP-ETKLPVVGIVSRFAAQKGFDLIQQVGDRLAREEAIFVVLGSGDKTY 336          

HSP 2 Score: 33.8834 bits (76), Expect = 1.727e-25
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            +F  +DW ++LIP  L+T+Y     +  AK+VF
Sbjct:  131 IFHCHDWQSALIPVLLRTLYAEDPAFDHAKIVF 163          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA2_GEOMG1.020e-2536.41Glycogen synthase 2 OS=Geobacter metallireducens (... [more]
GLGA_ELUMP1.020e-2533.33Glycogen synthase OS=Elusimicrobium minutum (strai... [more]
GLGA_STRSV1.020e-2540.64Glycogen synthase OS=Streptococcus sanguinis (stra... [more]
GLGA_LACAC1.020e-2540.22Glycogen synthase OS=Lactobacillus acidophilus GN=... [more]
GLGA_BACHK1.020e-2538.04Glycogen synthase OS=Bacillus thuringiensis subsp.... [more]
GLGA_BACC41.020e-2538.04Glycogen synthase OS=Bacillus cereus (strain B4264... [more]
GLGA_RHOP51.327e-2539.78Glycogen synthase OS=Rhodopseudomonas palustris (s... [more]
GLGA_PETMO1.327e-2536.81Glycogen synthase OS=Petrotoga mobilis (strain DSM... [more]
GLGA_RHOFD1.726e-2539.67Glycogen synthase OS=Rhodoferax ferrireducens (str... [more]
GLGA_ACIBL1.727e-2535.83Glycogen synthase OS=Acidobacteria bacterium (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
back to top