FC930036
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14 Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSF 676 ++YVG + +V+E +L E+ GPV + + + +GF+ + A AI LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS + ++M D +G S+GF F++F Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14 Identity = 50/150 (33.33%), Postives = 85/150 (56.67%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILPLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ +K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQK 151
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14 Identity = 50/150 (33.33%), Postives = 85/150 (56.67%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILPLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ +K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQK 151
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14 Identity = 50/150 (33.33%), Postives = 85/150 (56.67%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILPLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ +K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQK 151
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 53/154 (34.42%), Postives = 77/154 (50.00%), Query Frame = 2 Query: 227 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 53/154 (34.42%), Postives = 77/154 (50.00%), Query Frame = 2 Query: 227 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 53/154 (34.42%), Postives = 77/154 (50.00%), Query Frame = 2 Query: 227 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 P+ SGN D T ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13 Identity = 49/150 (32.67%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILPLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+ G++ D S +++FVGDL+P+V D L+ F VYPSC +V+ DQ TG S+G+GFV F ++ +K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYV-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQK 151
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13 Identity = 49/150 (32.67%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKD----KSSYGFIHYFDRRSAAMAILPLNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+++G++ + E + F++ G V K+IR + Y F+ + D +A + +NG+ L G + K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC +V+ D TG S+G+GFV F ++ +K Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQK 151
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13 Identity = 42/145 (28.97%), Postives = 75/145 (51.72%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 +V++ N+ + L + F++ G + CK+ + + + YGF+HY +A+ AI +NG L + + V R+ + NI+V +++PEVTD F Y + + + DQ+TG+SRGFGFV+F + + Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294 The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bpback to top |