FC930036
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32 Identity = 66/145 (45.52%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 260 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 D R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA A+ +NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 148
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.901e-30 Identity = 66/162 (40.74%), Postives = 98/162 (60.49%), Query Frame = 2 Query: 260 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-------------------YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 D R++YVGN+ VTE L+ ++FS GP + CK+I + S Y F+ +++ R AA A+ +NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 64/151 (42.38%), Postives = 95/151 (62.91%), Query Frame = 2 Query: 275 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 +++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ +NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 124.405 bits (311), Expect = 5.991e-28 Identity = 64/151 (42.38%), Postives = 95/151 (62.91%), Query Frame = 2 Query: 275 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 +++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ +NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24 Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 2 Query: 230 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 +P+ + G + S R +YVGN+ +TE +L++ F GP+ K++ + +K+ +Y F+ Y A +A+ LNG+ + +K+NWA+ S Q+ + FN+FVGDL+ V D TL F +PS VMWD +TG SRG+GFVSF +Q Sbjct: 61 VPANAITGGRETSD-RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 213
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 676 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 676 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 676 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15 Identity = 53/153 (34.64%), Postives = 85/153 (55.56%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAIL----PLNG-RHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 ++++G + VTE +Q+V+++ G KLIR + Y F+ + A+ A+ P+ G HLF K+NWA G RE + + ++IFVGDLSP V + +++ F S Y SC A++M D +T SRG+GFV F ++ +K Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF----KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQK 242
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14 Identity = 48/145 (33.10%), Postives = 74/145 (51.03%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+YVG + +TE LL +VFS GP+ ++ R K Y +++Y D + AI LN + G+P ++ W+ R+ SG NIF+ +L P + + L FS + +V D+ G SRGFGFV F+ + K Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAK 192 The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bpback to top |