FC930036
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13 Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + + +V D+ SRGFGFV F + Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH--GSRGFGFVHFETHE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13 Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13 Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13 Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 2 Query: 227 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 P+ SGN D T ++ + +T+ L+ +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 28 PVDSGNTE---DSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13 Identity = 45/150 (30.00%), Postives = 79/150 (52.67%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS------YGFIHYFDRRSAAMAILPLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 ++++G++ + +Q++++S K++R SS Y F+ + +A A++ N + G K+NWA G + + F+IFVGDL P D+ LF F S+YPSC+ A+++ D TG SR +GFV F +++ Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEK 235
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12 Identity = 44/142 (30.99%), Postives = 76/142 (53.52%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +V+ D+ SRG+GFV F Q+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETQE 149 HSP 2 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2 Query: 251 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +A AI +NG L + + V + +RE G N+++ + ++ D L FS + + +VM D TGRSRGFGFV++ N + Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHE 242
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 43/144 (29.86%), Postives = 78/144 (54.17%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H +VTE +L E FS GP+ ++ R + Y +++Y A A+ LN + G+P+++ W+ QR+ + SG N+F+ +L + + L+ FS + + +V D+K +G+GFV F+ Q+ Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWS----QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK--GPKGYGFVHFQKQE 140
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ + +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ + +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ + +F S G +E CKL+R YGF++Y D + A AI LNG L + IKV++A S + N++V L +T L FS Y +R++ DQ TG SRG GF+ F Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180 The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bpback to top |