FC930036

Overview
NameFC930036
Unique NameFC930036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930036_ssr126 microsatellite FC930036_ssr126:126..143. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:6..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 47/142 (33.10%), Postives = 74/142 (52.11%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   ++ R    +    Y +I++     A  A+  +N   L GQPI++ W+    G R+  SG  NIF+ +L   + +  L+  FS + +    +V  D+    SRGFGFV F   +
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEH--GSRGFGFVHFETHE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+  L+ +F S G +E CKL+R         YGF++Y D + A  AI  LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+  L+ +F S G +E CKL+R          YGF++Y D + A  AI  LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 52/154 (33.77%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  227 PIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            P+ SGN     D  T  ++    +   +T+  L+ +F S G +E CKL+R         YGF++Y D + A  AI  LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   28 PVDSGNTE---DSKT--NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 45/150 (30.00%), Postives = 79/150 (52.67%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS------YGFIHYFDRRSAAMAILPLNGRHLFGQ--PIKVNWAYASGQREDT----SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            ++++G++   +    +Q++++S       K++R   SS      Y F+ +    +A  A++  N   + G     K+NWA   G + +        F+IFVGDL P   D+ LF  F S+YPSC+ A+++ D  TG SR +GFV F +++
Sbjct:   86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEK 235          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 44/142 (30.99%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   ++ R    +    Y +I++     A  A+  +N   + G+PI++ W+    G R+  SG  N+F+ +L   + +  L+  FS + +    +V+ D+    SRG+GFV F  Q+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETQE 149          

HSP 2 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 45/153 (29.41%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  251 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            PG   S   +V++ N+   +    L + FS+ G +  CK++  +  S  YGF+H+  + +A  AI  +NG  L  + + V    +  +RE   G       N+++ +   ++ D  L   FS + +    +VM D  TGRSRGFGFV++ N +
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHE 242          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 43/144 (29.86%), Postives = 78/144 (54.17%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H +VTE +L E FS  GP+   ++ R    +    Y +++Y     A  A+  LN   + G+P+++ W+    QR+ +   SG  N+F+ +L   + +  L+  FS + +    +V  D+K    +G+GFV F+ Q+
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWS----QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEK--GPKGYGFVHFQKQE 140          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D + A  AI  LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D + A  AI  LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D + A  AI  LNG  L  + IKV++A  S      +   N++V  L   +T   L   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180          
The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PAP1L_HUMAN5.444e-1333.10Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
ELAV2_XENTR5.444e-1334.31ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_XENLA7.110e-1334.06ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV2_RAT7.110e-1333.77ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
CSX1_SCHPO7.110e-1330.00RNA-binding post-transcriptional regulator csx1 OS... [more]
EPAB_XENTR1.213e-1230.99Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PAP1M_HUMAN1.584e-1229.86Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
ELAV4_RAT1.584e-1233.58ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE1.584e-1233.58ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN1.584e-1233.58ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC34003B02EF PostHarvC1 Citrus clementina cDNA clone C34003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bp
TTTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCC
TAACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGA
AGGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACA
AGCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCG
GCCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCT
CCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACA
TACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTC
CAGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTT
ATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTCCTCTTAA
TGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCA
GTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGGTGAT
CTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTA
TCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTT
CTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAGCAGATGCGCAAGTGC
GATAACGACCTACTGG
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