FC930036
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++Y+GN+ +VT+ +L E+ GPV + +R + +GF + + A LN LFG+PI+VN A + + +T N+FVG+L P V + L+ FS A + + GRS+G+GFVS+ Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++ V+E L ++FS G V ++ R K Y ++++ D +A AI LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+ + ++V D+ TG+S+GFG+V F + Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWS----QRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDE 174
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 S+YVG + V+E LL ++FS G V ++ R Y ++++ D + AI LN + G+P ++ W+ QR+ + G NI++ +L P + + +L FS + + +V D+ G SRGFGFV F N+ Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWS----QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENE 176
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 55/165 (33.33%), Postives = 81/165 (49.09%), Query Frame = 2 Query: 239 GNLPPGFDPSTCRSVYVG------NIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQP---IKVNWAYASGQREDTS-------GHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRN 682 G+L P +D +T R ++ N+ L SS GP K+ Y F+ + AA A+L NG + P +K+NWA +S + S + +IFVGDL+P VT++ LF F + Y S S A+++ DQ TG S+G+GFV F N Sbjct: 59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 43/142 (30.28%), Postives = 76/142 (53.52%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+Y+G++H VTE +L E FS GP+ ++ R + SY +I++ A A+ +N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + + +V+ D+ SRG+GFV F + Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETHE 149 HSP 2 Score: 70.8626 bits (172), Expect = 7.861e-12 Identity = 44/153 (28.76%), Postives = 76/153 (49.67%), Query Frame = 2 Query: 251 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ +A AI +NG L + + V + +RE G N+++ + ++ D L FS + + +VM D +GRSRGFGFV++ N + Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHE 242
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12 Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+Y+G++H VTE +L E FS GP+ ++ R + Y +I++ A A+ +N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + +V+ D+ SRG+GFV F Q+ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQE 149 HSP 2 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 44/153 (28.76%), Postives = 77/153 (50.33%), Query Frame = 2 Query: 251 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 PG S +V++ N+ + L + FS+ G + CK++ + S YGF+H+ + +A AI +NG L + + V + +RE G N+++ + ++ D L FS + + +VM D +GRSRGFGFV++ N + Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHE 242
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12 Identity = 43/147 (29.25%), Postives = 77/147 (52.38%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+YVG++ V+E L ++FS G V ++ R K Y ++++ D + AI LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+ +++ D+ G+S+GFGFV F + K Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWS----QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAK 180
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ + +I + Y ++++ A A+ +N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149 HSP 2 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = 2 Query: 260 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF-RNQQMRKCDNDL 712 DPS +S +++ N+ + L + FS+ G + CK++ + S YGF+H+ + +A AI +NG L + + V + +RE G N+++ + ++ D L F Y + +VM D G+SRGFGFVSF R++ +K +D+ Sbjct: 90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ + +I + Y ++++ A A+ +N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q+ Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 2 Query: 260 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI---RKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG---HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 682 DPS RS +++ N+ + L + FSS G + CK+ YGF+ Y + SA AI LNG L + + V +R+ T+ N++V +L+ TD L F Y + A VM D + G+S+GFGFV+F N Sbjct: 115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFEN 264 HSP 2 Score: 67.3958 bits (163), Expect = 8.691e-11 Identity = 42/141 (29.79%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++ VT+ L + F G V + L+ + YG++++ + + AA AI LN L+G+PI+V +++ SG NIF+ +L + L FS + + +V D +G+S+G+GFV + N++ Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR-RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEE 175 The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bpback to top |