FC930036

Overview
NameFC930036
Unique NameFC930036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930036_ssr126 microsatellite FC930036_ssr126:126..143. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:6..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 44/137 (32.12%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++Y+GN+  +VT+ +L E+    GPV    +    +R   + +GF  +   +    A   LN   LFG+PI+VN A +  +  +T    N+FVG+L P V +  L+  FS       A  +   + GRS+G+GFVS+
Sbjct:   12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 44/144 (30.56%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++   V+E  L ++FS  G V   ++ R    K    Y ++++ D  +A  AI  LN   + G+  ++ W+    QR+ +    G  NIF+ +L P++ +  L+  FSV+ +   ++V  D+ TG+S+GFG+V F   +
Sbjct:   36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWS----QRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDE 174          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685
            S+YVG +   V+E LL ++FS  G V   ++ R         Y ++++ D  +   AI  LN   + G+P ++ W+    QR+ +    G  NI++ +L P + + +L   FS + +    +V  D+  G SRGFGFV F N+
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWS----QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENE 176          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 55/165 (33.33%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  239 GNLPPGFDPSTCRSVYVG------NIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQP---IKVNWAYASGQREDTS-------GHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRN 682
            G+L P +D +T R ++        N+       L     SS GP        K+   Y F+ +     AA A+L  NG  +   P   +K+NWA +S    + S        + +IFVGDL+P VT++ LF  F + Y S S A+++ DQ TG S+G+GFV F N
Sbjct:   59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 43/142 (30.28%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+Y+G++H  VTE +L E FS  GP+   ++ R    +   SY +I++     A  A+  +N   + G+PI++ W+    G R+  SG  N+F+ +L   + +  L+  FS + +    +V+ D+    SRG+GFV F   +
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETHE 149          

HSP 2 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 44/153 (28.76%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  251 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            PG   S   +V++ N+   +    L + FS+ G +  CK++  +  S  YGF+H+    +A  AI  +NG  L  + + V    +  +RE   G       N+++ +   ++ D  L   FS + +    +VM D  +GRSRGFGFV++ N +
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHE 242          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+Y+G++H  VTE +L E FS  GP+   ++ R    +    Y +I++     A  A+  +N   + G+PI++ W+    G R+  SG  N+F+ +L   + +  L+  FS +      +V+ D+    SRG+GFV F  Q+
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQE 149          

HSP 2 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 44/153 (28.76%), Postives = 77/153 (50.33%), Query Frame = 2
Query:  251 PGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            PG   S   +V++ N+   +    L + FS+ G +  CK++  +  S  YGF+H+  + +A  AI  +NG  L  + + V    +  +RE   G       N+++ +   ++ D  L   FS + +    +VM D  +GRSRGFGFV++ N +
Sbjct:   91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHE 242          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 43/147 (29.25%), Postives = 77/147 (52.38%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697
            S+YVG++   V+E  L ++FS  G V   ++ R    K    Y ++++ D  +   AI  LN   + G+  ++ W+    QR+ +    G  NIF+ +L P++ +  L+  FSV+     +++  D+  G+S+GFGFV F  +   K
Sbjct:   39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWS----QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAK 180          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+  +N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149          

HSP 2 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 47/163 (28.83%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  260 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF-RNQQMRKCDNDL 712
            DPS  +S    +++ N+   +    L + FS+ G +  CK++  +  S  YGF+H+  + +A  AI  +NG  L  + + V    +  +RE   G       N+++ +   ++ D  L   F  Y +    +VM D   G+SRGFGFVSF R++  +K  +D+
Sbjct:   90 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+  +N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q+
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 2
Query:  260 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI---RKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSG---HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 682
            DPS  RS    +++ N+   +    L + FSS G +  CK+          YGF+ Y +  SA  AI  LNG  L  + + V       +R+ T+      N++V +L+   TD  L   F  Y   + A VM D + G+S+GFGFV+F N
Sbjct:  115 DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFEN 264          

HSP 2 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 42/141 (29.79%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++   VT+  L + F   G V   +    L+ +    YG++++ + + AA AI  LN   L+G+PI+V +++        SG  NIF+ +L   +    L   FS + +    +V  D  +G+S+G+GFV + N++
Sbjct:   37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR-RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEE 175          
The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SAP49_SCHPO2.069e-1232.12Spliceosome-associated protein 49 OS=Schizosacchar... [more]
PABP_CANGA2.069e-1230.56Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASHGO2.069e-1230.77Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NAM8_YEAST2.069e-1233.33Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
EPABA_XENLA2.069e-1230.28Embryonic polyadenylate-binding protein A OS=Xenop... [more]
EPABB_XENLA2.702e-1230.28Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_YEAST4.609e-1229.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPB_XENLA6.019e-1229.17Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABPA_XENLA6.019e-1229.17Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP2_ARATH6.019e-1232.45Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC34003B02EF PostHarvC1 Citrus clementina cDNA clone C34003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bp
TTTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCC
TAACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGA
AGGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACA
AGCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCG
GCCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCT
CCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACA
TACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTC
CAGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTT
ATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTCCTCTTAA
TGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCA
GTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGGTGAT
CTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTA
TCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTT
CTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAGCAGATGCGCAAGTGC
GATAACGACCTACTGG
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