FC930036

Overview
NameFC930036
Unique NameFC930036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930036_ssr126 microsatellite FC930036_ssr126:126..143. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:6..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+  +N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+  +N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+  +N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   +    +I +    Y ++++     A  A+  +N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q+
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 43/144 (29.86%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H  VTE +L E FS  GP+   +    LI    S+Y ++++   + A  A+  +N   + G+P+++ W+    QR+ +   SG  NIFV +L   + +  L+   S + +     V+ D+    S+G+GFV F   +
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVE-GCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQ--PIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697
            S+++G++   + E  +++ FS+ G    G K+I        + Y F+   D  S    +  LNG+ + G   P K    YA+ G+R +    F++FVGDL+ EV D  L   F   +PSC  A+V+ D   G SRG+GFV F ++  +K
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQK 154          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  260 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQR-EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697
            DPS  +S    V++ N+   +    L + FS+ G +  CK++  D +S   +GF+HY  + SA  AI  +NG  + GQ + V    +S +R + T   F N+F  +LS +V    L      Y   ++  +M D K G+S+GFGF +F + +  K
Sbjct:   89 DPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAK 242          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 43/163 (26.38%), Postives = 78/163 (47.85%), Query Frame = 2
Query:  212 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            AP++  + S   P    P +  S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +   +
Sbjct:   29 APEVTAVESTTAPNASQPHSA-SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 188          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H+ VTE +L E FS  GPV   +    +I +    Y ++++     A  A+  +N   + G+PI++ W+    QR+ +   SG  N+F+ +L   + +  L+  FS + +    +V+ D+    S+G+ FV F  Q+
Sbjct:   12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWS----QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 42/140 (30.00%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685
            S+YVG++H  VTE LL   FS+ GPV   ++ R    +    Y ++++     A  A+  +N   + G+ I++ W+         SG  N+F+ +L   + + TL+  FS +     ++VM D +   S+G+ FV F+NQ
Sbjct:   11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ--GSKGYAFVHFQNQ 147          
The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PABP1_RAT6.019e-1229.17Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE6.019e-1229.17Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN6.019e-1229.17Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN6.019e-1229.17Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP3_HUMAN1.027e-1129.86Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
TSP1L_DANRE1.341e-1132.89tRNA selenocysteine 1-associated protein 1-like OS... [more]
PAP1A_DICDI1.341e-1131.61Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PABP_ASPOR1.341e-1126.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN1.341e-1129.17Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PAB4L_HUMAN1.341e-1130.00Polyadenylate-binding protein 4-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC34003B02EF PostHarvC1 Citrus clementina cDNA clone C34003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bp
TTTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCC
TAACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGA
AGGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACA
AGCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCG
GCCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCT
CCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACA
TACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTC
CAGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTT
ATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTCCTCTTAA
TGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCA
GTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGGTGAT
CTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTA
TCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTT
CTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAGCAGATGCGCAAGTGC
GATAACGACCTACTGG
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