FC930036
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ + +I + Y ++++ A A+ +N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ + +I + Y ++++ A A+ +N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ + +I + Y ++++ A A+ +N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ + +I + Y ++++ A A+ +N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +V+ D+ S+G+GFV F Q+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 43/144 (29.86%), Postives = 76/144 (52.78%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H VTE +L E FS GP+ + LI S+Y ++++ + A A+ +N + G+P+++ W+ QR+ + SG NIFV +L + + L+ S + + V+ D+ S+G+GFV F + Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVE-GCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQ--PIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 S+++G++ + E +++ FS+ G G K+I + Y F+ D S + LNG+ + G P K YA+ G+R + F++FVGDL+ EV D L F +PSC A+V+ D G SRG+GFV F ++ +K Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQK 154
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 2 Query: 260 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQR-EDTSGHF-NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQMRK 697 DPS +S V++ N+ + L + FS+ G + CK++ D +S +GF+HY + SA AI +NG + GQ + V +S +R + T F N+F +LS +V L Y ++ +M D K G+S+GFGF +F + + K Sbjct: 89 DPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAK 242
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 43/163 (26.38%), Postives = 78/163 (47.85%), Query Frame = 2 Query: 212 APQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 AP++ + S P P + S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + + Sbjct: 29 APEVTAVESTTAPNASQPHSA-SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 188
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 42/144 (29.17%), Postives = 77/144 (53.47%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 S+YVG++H+ VTE +L E FS GPV + +I + Y ++++ A A+ +N + G+PI++ W+ QR+ + SG N+F+ +L + + L+ FS + + +V+ D+ S+G+ FV F Q+ Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWS----QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 42/140 (30.00%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 S+YVG++H VTE LL FS+ GPV ++ R + Y ++++ A A+ +N + G+ I++ W+ SG N+F+ +L + + TL+ FS + ++VM D + S+G+ FV F+NQ Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLR-RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ--GSKGYAFVHFQNQ 147 The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bpback to top |