FC930036

Overview
NameFC930036
Unique NameFC930036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930036_ssr126 microsatellite FC930036_ssr126:126..143. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:6..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 45/155 (29.03%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  233 PSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            PSG  P      T  S+YVG +   VTE +L E+F+S GPV   ++ R    +    Y ++++ +      A+  LN   + G+P ++ W+    QR+ +    G  N+F+ +L P + +  L   FS +      +V  D+  G ++G+GFV F
Sbjct:   72 PSGTAP------TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS----QRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHF 215          

HSP 2 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 43/151 (28.48%), Postives = 76/151 (50.33%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR--KDK-SSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            +VY+ N+ T++TE    ++F   G +    L++   DK   +GF++Y +   A  A+  LN +   G+ + V  A    +RE+                    N+F+ +L  EV D  L A FS + + + A++M D++ G+S+GFGFV +
Sbjct:  262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCY 411          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 45/155 (29.03%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  260 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            DPS  R+    +++ N+H  +    L + FS+ G +  CK+   +      +GF+HY    +A  AI  +NG  L  + + V    +   RE       +   N++V +L+PEV +A     F  +   +   +  DQ+ G+SRGFGFV+F N +
Sbjct:  137 DPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHE 290          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 41/144 (28.47%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCK----LIRKDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            S+YVG++H   TE +L E FS  GP+   +    +I +    Y ++++     A  A+  +N   + G+P+++ W+    QR+ +   SG  NIF+ +L   + +  L+  FS + +    +V+ D+    S+G+GFV F  Q+
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 149          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 2
Query:  230 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            +P+G L    G    +  ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI  LNG  L  + IKV++A  S      +   N++V  L   ++   +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 45/173 (26.01%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  194 HPGLLAAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            +P   +AP++  + S +  P   PS  +    S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +   +
Sbjct:   23 NPAATSAPEVTAVESAS--PSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 191          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = 2
Query:  260 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI---RKDKS-SYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 673
            +PS    ++VGN+   V    L  +F   G VE  ++I     D+S  +GF+       A  A+   N   L G+ + VN A   G R + +       F ++VG+L  +V +  L   FS +    +ARV++D++TGRSRGFGFV+
Sbjct:  145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI  LNG  L  + IKV++A  S      +   N++V  L   +    +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   35 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 168          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 2
Query:  230 IPSGNL--PPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            +P+G L    G    +  ++ V  +   +T+   + +F S G +E CKL+R         YGF++Y D   A  AI  LNG  L  + IKV++A  S      +   N++V  L   ++   +   FS Y     +R++ DQ TG SRG GF+ F
Sbjct:   22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 49/174 (28.16%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  209 AAPQIEPIPSGNLPPGFDPS-------TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            AA + E + + + P G + +       +  S+YVG ++T V E  L E+FS  G V   ++ R    K    Y +++Y        AI  LN   + G+P ++ W+    QR+ +   SG  NIF+ +L P + +  L   FS +      +V  D   G+S+ FGFV +   +
Sbjct:   23 AAAEEEAVAAESAPAGEEGADSANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWS----QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDD-MGQSKCFGFVHYETAE 191          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 43/164 (26.22%), Postives = 75/164 (45.73%), Query Frame = 2
Query:  209 AAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            AAP  E   +    P        S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +   +
Sbjct:   26 AAPAAEATAAETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 187          
The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PABP_SCHPO1.751e-1129.03Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU1.751e-1129.03Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB1.751e-1128.47Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
ELAV3_MOUSE1.751e-1130.97ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
PABP_NEOFI2.287e-1126.01Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC3_ARATH2.987e-1132.6531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ELAV3_XENLA2.987e-1132.12ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV3_HUMAN2.987e-1130.97ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
PABP_PICST3.901e-1128.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN3.901e-1126.22Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC34003B02EF PostHarvC1 Citrus clementina cDNA clone C34003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bp
TTTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCC
TAACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGA
AGGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACA
AGCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCG
GCCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCT
CCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACA
TACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTC
CAGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTT
ATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTCCTCTTAA
TGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCA
GTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGGTGAT
CTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTA
TCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTT
CTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAGCAGATGCGCAAGTGC
GATAACGACCTACTGG
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