FC930036
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ L+ +FSS G VE KLIR + YGF++Y + + A AI LNG L + IKV++A S +T N+++ L +T + F + ++RV+ DQ TG SRG F+ F Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPS---SETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRF 154
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 44/168 (26.19%), Postives = 77/168 (45.83%), Query Frame = 2 Query: 197 PGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 P + A P P+ N P S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + + Sbjct: 34 PEVTAVENSTPAPAANQPHS------ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 193
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685 S+YVG++H VTE +L + F+ + +L KD SS YG+ ++ R+ A +AI N L G+ I+V W+ + +G N+FV +L VT+A L F + + +V + G+SRG+GFV F + Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLC-KDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR-RNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQE 162
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ L+ +FSS G VE KLIR + YGF++Y + A AI LNG L + IKV++A S + N+++ L +T + FS + ++RV+ DQ TG SRG F+ F Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPS---SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 44/168 (26.19%), Postives = 81/168 (48.21%), Query Frame = 2 Query: 209 AAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688 +AP++ + S + P PS + S+YVG + VTE +L E+FSS G V ++ R + Y +++Y + A+ LN + G+P ++ W+ T G N+F+ +L + + L F+ + + +V D+ G S+G+GFV + + Sbjct: 28 SAPEVTAVESAS--PSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 191
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2 Query: 278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676 ++ V + +T+ L+ +FSS G VE KLIR + YGF++Y + A AI LNG L + IKV++A S + N+++ L +T + FS + ++RV+ DQ TG SRG F+ F Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS---SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154 The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bpback to top |