FC930036

Overview
NameFC930036
Unique NameFC930036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930036_ssr126 microsatellite FC930036_ssr126:126..143. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:6..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+  L+ +FSS G VE  KLIR   +     YGF++Y + + A  AI  LNG  L  + IKV++A  S    +T    N+++  L   +T   +   F  +    ++RV+ DQ TG SRG  F+ F
Sbjct:   21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPS---SETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRF 154          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 44/168 (26.19%), Postives = 77/168 (45.83%), Query Frame = 2
Query:  197 PGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            P + A     P P+ N P         S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +   +
Sbjct:   34 PEVTAVENSTPAPAANQPHS------ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 193          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 46/141 (32.62%), Postives = 74/141 (52.48%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 685
            S+YVG++H  VTE +L + F+    +   +L  KD SS     YG+ ++  R+ A +AI   N   L G+ I+V W+  +      +G  N+FV +L   VT+A L   F  + +    +V    + G+SRG+GFV F  +
Sbjct:   25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLC-KDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR-RNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQE 162          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+  L+ +FSS G VE  KLIR   +     YGF++Y   + A  AI  LNG  L  + IKV++A  S    +     N+++  L   +T   +   FS +    ++RV+ DQ TG SRG  F+ F
Sbjct:   21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPS---SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 44/168 (26.19%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  209 AAPQIEPIPSGNLPPGFDPSTCR----SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 688
            +AP++  + S +  P   PS  +    S+YVG +   VTE +L E+FSS G V   ++ R    +    Y +++Y +      A+  LN   + G+P ++ W+        T G  N+F+ +L   + +  L   F+ + +    +V  D+  G S+G+GFV +   +
Sbjct:   28 SAPEVTAVESAS--PSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAE 191          
BLAST of FC930036 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 45/137 (32.85%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  278 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILPLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 676
            ++ V  +   +T+  L+ +FSS G VE  KLIR   +     YGF++Y   + A  AI  LNG  L  + IKV++A  S    +     N+++  L   +T   +   FS +    ++RV+ DQ TG SRG  F+ F
Sbjct:   21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS---SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154          
The following BLAST results are available for this feature:
BLAST of FC930036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ELV1B_XENLA3.901e-1132.85ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
PABP_ASPNC5.095e-1126.19Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPX_ARATH5.095e-1132.62Probable polyadenylate-binding protein At2g36660 O... [more]
ELAV1_MOUSE5.095e-1132.85ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
PABP_ASPFU6.655e-1126.19Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV1_HUMAN6.655e-1132.85ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC34003B02EF PostHarvC1 Citrus clementina cDNA clone C34003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930036 ID=FC930036; Name=FC930036; organism=Citrus clementina; type=EST; length=716bp
TTTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCC
TAACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGA
AGGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACA
AGCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCG
GCCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCT
CCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACA
TACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTC
CAGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTT
ATTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTCCTCTTAA
TGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCA
GTGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGGTGAT
CTGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTA
TCCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTT
CTAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAGCAGATGCGCAAGTGC
GATAACGACCTACTGG
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