FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_PHANO (Mitochondrial thiamine pyrophosphate carrier 1 OS=Phaeosphaeria nodorum GN=TPC1 PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWI-ILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMV---KLACGSIAGLLGQTFTYPLD 692
            G  G++K+I + EG  G ++GN  +    + Y ++ + AY    + +  +  P          I+G+ AG  A   TYPLDL+RT+ A Q               + VY  I    +   +  G  G +RG    +  I PY GL F  YE +K  V  D    + +       G +A ++ +T  YPLD
Sbjct:   65 GTLGTLKQILRDEGVTGLWKGNIPAELLYLTYGSVQFSAYTNISQMLDTIPAPYTLPSSANSFISGAGAGAAATTVTYPLDLLRTRFAAQ-------------GKDRVYTSIVASLKSIAQHEGPTGFFRGLGAGVSQIVPYMGLFFASYESLK-PVMADSPLPLPLGSSDAVAGVVASVVSKTAVYPLD 240          

HSP 2 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  138 VFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYE 584
            +  S+K IA+ EG  GF+RG GA V++IVPY  L + +YE  +  +  S   +  G   D +AG  A   +    YPLD  R +L  Q  + ++   + + +    Y G+    +  +K  G RG+YRG   SL    P + +  + YE
Sbjct:  163 IVASLKSIAQHEGPTGFFRGLGAGVSQIVPYMGLFFASYESLKPVMADSPLPLPLGS-SDAVAGVVASVVSKTAVYPLDTTRKRLQVQGPNRARYVHRNIPT----YSGVLMTLQHIWKHEGRRGMYRGLTVSLLKAAPASAVTMWTYE 306          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_KLULA (Mitochondrial thiamine pyrophosphate carrier 1 OS=Kluyveromyces lactis GN=TPC1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 56/211 (26.54%), Postives = 103/211 (48.82%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI-GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIM---VKLACGSIAGLLGQTFTYPLDVV 698
            P++ VKI  Q +  +  +  G+  +++ I K EG    ++GN  + A  V Y A+ + +Y  +       FP  S+     L  G+ AG T+ + +YPLDL+RT+L      +++ + +  V+ E          RQ +   G+RG + G + ++  +     + F  YE +   V E+H+K+     V  + G IAG + +T  +P+D +
Sbjct:   38 PMDTVKIRYQLQPVQEDKYKGIASTVRTIMKEEGLRALWKGNIPATAMYVVYGAVQFGSYSWFNNVWSAKFPRFSQ-QGQTLTVGALAGMTSSVVSYPLDLLRTRLI-----ANRTSHRTSVAEE---------CRQMWLNEGVRGFFTGISTAMTTVTLSTAIMFLTYETV-NIVCENHEKEFWSRPVSASSGIIAGFVSKTMVFPIDTL 232          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCFM_DICDI (Mitochondrial substrate carrier family protein M OS=Dictyostelium discoideum GN=mcfM PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 57/201 (28.36%), Postives = 90/201 (44.78%), Query Frame = 3
Query:  120 EFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLD-LIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIF-------PYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            +F R+GV  + K + K EG   F+RG+  ++         +   YE Y+  I+ S  +V++    D  I    A  T V  T P+ L++T++  Q   S+           + Y GI D  ++T K  G +GLY+G  PSL+  F        Y  +KFYF     + +   +  +I +     SI+  L  T  YP  VV
Sbjct:   48 KFKRVGVIDTCKNVLKNEGIKQFWRGSSPTIVASGIAWGTYMHFYEAYKN-ILKSKYNVTQLNTFDHFICAVGASATQVFITNPIFLIKTRMQLQTPGSA-----------NYYTGIFDGIKKTVKVEGFKGLYKGVIPSLWLTFHGGIQMSSYEHIKFYFSSNSGKSLDSLNASEIFI---ASSISKFLASTILYPFQVV 233          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2540_DICDI (Mitochondrial substrate carrier family protein H OS=Dictyostelium discoideum GN=mcfH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 58/237 (24.47%), Postives = 105/237 (44.30%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI------GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPV--LDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGV-------------VSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR---------HVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ VK  +QT+    H        G   + KKI K EG + F+RG   S+   +P A +++ +Y EY +  +  F D     +  + L+AG+ A   +   T P +L+RT     ++ ++ KN   +             +S+E  +   +  +R      G++GL+RG  P+L    P++ + +  YE +K          +   + K    +    G+ +G L    T P+DV+
Sbjct:   51 PLDVVKTRLQTQNTGSHINQKHVFKGTLDAFKKIYKNEGPLTFWRGVTPSLLMTIPSATIYFTSY-EYLKEYLYQFNDTEAYNIYTVPLVAGTLARIFSASVTSPFELLRTNSQGIVLQNAYKNTVAMAASSSTATIGTIPLSSEQRFNSFK-LYRDIVNNVGIKGLWRGLGPTLVRDVPFSAIYWAGYEVLKNKLMKSQIDPNFSRNSKSPFFINFIAGATSGTLAAVLTTPIDVI 285          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MFRN_CAEBR (Mitoferrin OS=Caenorhabditis briggsae GN=CBG02884 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 48/142 (33.80%), Postives = 69/142 (48.59%), Query Frame = 3
Query:  171 EGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKL-AYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK 593
            EG   FYR     +A  VP+ A+H+M YE +++  +L+ P+    P   LIAG  AGG A   T P+D V+T L   Q  ++   N +  + A + YRGI D  R  Y + G+ G   G    +    P   L +  YE  K
Sbjct:  162 EGFAAFYRSYTTQLAMNVPFQAIHFMGYEFWQQ--VLN-PEHKYDPKSHLIAGGLAGGLAAAVTTPMDCVKTVLNTQQAAEADPSNRRIFLKARYRYRGISDAVRTIYSQRGMAGFSCGLQARVIFQVPATALSWSVYELFK 300          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: YQ73_SCHPO (Uncharacterized mitochondrial carrier C1442.03 OS=Schizosaccharomyces pombe GN=SPCC1442.03 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 52/168 (30.95%), Postives = 77/168 (45.83%), Query Frame = 3
Query:  144 GSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSK---------------KNFQGVVSAEHVYR--GIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR 596
            G++K+IAK EG   F+ G  A++ R +P++    + YE+ R+           G   +LI GS AG  A   T PLD+ +T+L   I  + K               +N +   +A  V    GIR      YK  GL GL+RG  P ++     + L F FYE + R
Sbjct:  160 GAVKQIAKQEGMKTFFYGYRATILRDIPFSGFQLLFYEKLRQVAQKECGQKDIGVFRELITGSLAGAGAGFLTTPLDVAKTRLQTMIRTTDKVSDDINSGRYFFAKDENSKSKSAASLVKPKIGIRHVLGGLYKSEGLLGLFRGFGPRIFWTSSQSSLMFVFYEGIIR 327          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_DEBHA (Mitochondrial thiamine pyrophosphate carrier 1 OS=Debaryomyces hansenii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 57/215 (26.51%), Postives = 95/215 (44.19%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI-GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRG------PVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDI-MVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ +KI +Q +   +    G   +   I K EG    ++GN  +    + Y A+ + +Y    +  +  F   +R           LIAGS +G  +  FTYP DL+RT+LA               ++E  +  +    +  Y+  G+ G  +G  P L  +    GL F+ Y E+ R    ++K  I  ++  CG IAG   +  T+PLD +
Sbjct:   43 PLDTIKIRLQLQIQGYDTYKGASKTFVSICKNEGVKALWKGNVPAEILYILYGAIQFTSYSALSK-ALSEFEKNNRNLFTISNSTHSLIAGSGSGLASTFFTYPFDLLRTRLA--------------ANSEAHFLSMSSTIKSIYEMHGIGGFCKGLTPGLLSVASSTGLMFWSY-ELAREFSNNYKDVIPFLEGFCGFIAGATAKGLTFPLDTL 241          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: AGC1_YEAST (Mitochondrial aspartate-glutamate transporter AGC1 OS=Saccharomyces cerevisiae GN=AGC1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 60/215 (27.91%), Postives = 95/215 (44.19%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHV----PEDHKKDIMVK----LACGSIAGLLGQTFTYPLDVV 698
            P++ +K  +Q +R+          + KI   EG  G Y G G  +  + P  A+     +  R  +      +S  P  ++I+G+ AG   V+FT PL++V+ +L  Q  D   +N Q             +   Q  K+ GLRGLY G A  L    P++ + F  Y  +K+ +    P D  K   +K    L  G+IAG+     T P DV+
Sbjct:  550 PIDFIKTRMQAQRSLAQYKNSIDCLLKIISREGIKGLYSGLGPQLIGVAPEKAIKLTVNDFMRNRLTDKNGKLSLFP--EIISGASAGACQVIFTNPLEIVKIRLQVQS-DYVGENIQQA----------NETATQIVKKLGLRGLYNGVAACLMRDVPFSAIYFPTYAHLKKDLFDFDPNDKTKRNRLKTWELLTAGAIAGMPAAFLTTPFDVI 751          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: YEA6_YEAST (Probable mitochondrial carrier YEL006W OS=Saccharomyces cerevisiae GN=YEL006W PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 51/201 (25.37%), Postives = 91/201 (45.27%), Query Frame = 3
Query:  126 HRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSF-AGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGS---------IAGLLGQTFTYPLDVV 698
            H  G FG+   I K EGA G Y+G   +V   +P   +++  Y+  R++ +  FP     P L   + +  AG  + + T P+ +V+T+L  Q          G+      Y+G  D FR+  ++ G + LY G  P+L G+   A ++F  YE +K         D+   +   +         ++ ++  T TYP +++
Sbjct:   80 HYKGFFGTFATIFKDEGAAGLYKGLQPTVLGYIPTLMIYFSVYDFCRKYSVDIFP---HSPFLSNASSAITAGAISTVATNPIWVVKTRLMLQ---------TGIGKYSTHYKGTIDTFRKIIQQEGAKALYAGLVPALLGMLNVA-IQFPLYENLKIRFGYSESTDVSTDVTSSNFQKLILASMLSKMVASTVTYPHEIL 267          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2540_XENTR (Solute carrier family 25 member 40 OS=Xenopus tropicalis GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 46/198 (23.23%), Postives = 92/198 (46.46%), Query Frame = 3
Query:  114 RAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDH---KKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            RA  H  G   +  +I + EG    + G   ++   VP   +++  Y++ R  +I S P+  R  +  L+AG+ A   +     PL+L+RTK+ Y+ +                Y+ +R C + +  + G   L++G  P++    P++ L ++ YE +K+ + + +   +    +    G+++G +    T P DVV
Sbjct:   80 RAPGHFRGTTDAFVQIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLRDILIRSMPE--RAEIASLVAGATARLWSATLISPLELIRTKMQYRPLS---------------YKELRQCIQSSVAKDGWLALWKGWGPTVLRDVPFSALYWHNYELVKQSLCQRYNTLQPTFAISFTAGAVSGSIAAIVTLPFDVV 260          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
TPC1_PHANO3.076e-1327.89Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_KLULA4.017e-1326.54Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MCFM_DICDI4.017e-1328.36Mitochondrial substrate carrier family protein M O... [more]
S2540_DICDI5.246e-1324.47Mitochondrial substrate carrier family protein H O... [more]
MFRN_CAEBR6.852e-1333.80Mitoferrin OS=Caenorhabditis briggsae GN=CBG02884 ... [more]
YQ73_SCHPO8.949e-1330.95Uncharacterized mitochondrial carrier C1442.03 OS=... [more]
TPC1_DEBHA8.949e-1326.51Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
AGC1_YEAST1.169e-1227.91Mitochondrial aspartate-glutamate transporter AGC1... [more]
YEA6_YEAST1.526e-1225.37Probable mitochondrial carrier YEL006W OS=Saccharo... [more]
S2540_XENTR1.526e-1223.23Solute carrier family 25 member 40 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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