FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2539_RAT (Solute carrier family 25 member 39 OS=Rattus norvegicus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 51/192 (26.56%), Postives = 88/192 (45.83%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHV-YRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD---IMVKLACGSIAGLLGQTFTYPLDVV 698
            G   +  KI + EG    + G  A++   VP  A+++ AY++ + +  L    ++      ++AG+ A    V    PL+LVRTKL                 A+HV YR +  C +    + G R L+ G  P+     P++ L ++ YE +K  +    +K+   + +    G I+G++  T T P DVV
Sbjct:  106 GTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAF--LCGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKL----------------QAQHVSYRELAACVQAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSQLNGPRQKEQTSVGISFVAGGISGMVAATLTLPFDVV 279          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCATL_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Mus musculus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 56/210 (26.67%), Postives = 92/210 (43.81%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI-GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVK--LACGSIAGLLGQTFTYPLDVV 698
            P + VK+ +Q +  E  +  G     + I K E  +G Y+G G+ +  +    AL +       R +          P+   +AG+ AG    +   P++L +T+L  Q V  ++            Y+G  DC  Q Y+  GLRG+ RG   +L    P  G+ F  Y+ M R +  +    ++V   L  G  +G+     TYP+DVV
Sbjct:   21 PFDIVKVRLQVQSTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRAL------GQDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQAVGPAR-----------TYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVMTRAMGCEPGDRLLVPKLLLAGGTSGITSWLSTYPMDVV 213          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2538_RAT (Solute carrier family 25 member 38 OS=Rattus norvegicus GN=Slc25a38 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 55/215 (25.58%), Postives = 94/215 (43.72%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEF---HRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR---HVPEDHKKDIM--VKLACGSIAGLLGQTFTYPLDVV 698
            PL+ +K  +QT +       R+G+     K+ +TE  +G ++G   S+ R VP   +++      +++ +   P  +   V   I G  +   A +   P+ +V+T+              G  S E VY  +R      Y   G RGL+RG   +L    P++GL   FY + +    H  ++    +M  V  +CG  AG+L    T P DV+
Sbjct:   67 PLDLLKTRLQTLQPSDVGPRRVGMLSVFLKVVRTETLLGLWKGMSPSIVRCVPGVGIYFGTLYSSKQYFLRGHPPTALESV---ILGMGSRSVAGVCMSPITVVKTRYE-----------SGAYSYESVYAALRSI----YCSEGSRGLFRGLTATLLRDAPFSGLYLMFYSQTRATVLHGADELDAALMPLVNFSCGVFAGILASLVTQPADVI 263          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCATL_BOVIN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 56/210 (26.67%), Postives = 92/210 (43.81%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI-GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVK--LACGSIAGLLGQTFTYPLDVV 698
            P + VK+ +Q +  E  +  G     + I K E  +G YRG G+ +  +    AL +       R +          P+   +AG+ AG    +   P++L +T+L  Q    ++            YRG  DC  Q Y++ GLRG+ RG   +L    P  G+ F  Y+ + R +  +    ++V   L  G  +G+     TYP+DVV
Sbjct:   21 PFDTVKVRLQVQSVEKPQYRGTLHCFQAIIKQESVLGLYRGLGSPLLGLTFINALVFGVQGNTLRALGRD------SPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQEAGPAR-----------TYRGPLDCLAQIYRQEGLRGVNRGMVSTLLRETPSFGVYFLTYDVLTRALGCEPGDRLLVPKLLLAGGTSGIASWLSTYPVDVV 213          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: CMC1_CAEEL (Probable calcium-binding mitochondrial carrier K02F3.2 OS=Caenorhabditis elegans GN=K02F3.2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 41/126 (32.54%), Postives = 62/126 (49.21%), Query Frame = 3
Query:  321 IAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            + GS AG       YP+DLV+T++  Q    S   F G V    +Y+   DCF++  K  GL GLYRG  P + G+ P   +K    + M+    +D K  +  ++  G   G+    FT PL++V
Sbjct:  374 LLGSVAGACGATAVYPIDLVKTRMQNQRTSGS---FVGEV----MYKNSLDCFKKVVKFEGLLGLYRGLLPQIVGVAPEKAIKLTMNDYMRDKFTKDGKIPLYGEIIAGGTGGMCQVVFTNPLEIV 492          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2538_BOVIN (Solute carrier family 25 member 38 OS=Bos taurus GN=SLC25A38 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 49/217 (22.58%), Postives = 93/217 (42.86%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFH---RIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIM-------VKLACGSIAGLLGQTFTYPLDVV 698
            PL+ +K  +QT +   H   R+G+   +  + +TE  +G ++G   S+ R VP   +++      +++ +   P  +   +  +I G+ +   A +   P+ +++T+                 S  + Y  +    R      G RGL+ G   +L    P++G+   FY + K  V   H+ D +       V  +CG  AG+L    T P DV+
Sbjct:   47 PLDLLKTRLQTLQPSAHGSRRVGMLALLLNVVRTESPLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTA---LESIILGAGSRSVAGVCMSPITVIKTRYE---------------SGRYGYESVYAALRSICHSEGFRGLFSGLTATLLRDAPFSGIYLMFYSQTKNVVL--HRTDQLDAVLVPVVNFSCGIFAGILASLVTQPADVI 243          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2539_BOVIN (Solute carrier family 25 member 39 OS=Bos taurus GN=SLC25A39 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 56/196 (28.57%), Postives = 86/196 (43.88%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTY----PLDLVRTKLAYQIVDSSKKNFQGVVSAEHV-YRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD---IMVKLACGSIAGLLGQTFTYPLDVV 698
            G   +  KI + EG    + G  A++   VP  A ++ AY++ + ++        R    DL A   AG  A L T     PL+LVRTKL                 A+H+ YR +  C R    + G R L+ G  P+     P++ L ++ YE +K  +     KD   + +    G I+G++  T T P DVV
Sbjct:  106 GTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAAYFTAYDQLKAFLC------GRALTSDLYAPMVAGALARLGTVTVISPLELVRTKL----------------QAQHLSYRELGTCVRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLSGLRPKDQTSVGISFVAGGISGMVAATLTLPFDVV 279          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 54/210 (25.71%), Postives = 91/210 (43.33%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI-GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVK--LACGSIAGLLGQTFTYPLDVV 698
            P + VK+ +Q +  E  +  G     + I K E  +G Y+G G+ +  +    AL +       R +          P+   +AG+ AG    +   P++L +T+L  Q    ++            Y+G  DC  Q Y+  GLRG+ RG   +L    P  G+ F  Y+ + R +  +    ++V   L  G  +G+     TYP+DVV
Sbjct:   21 PFDTVKVRLQVQNTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRAL------GQDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQAAGPAR-----------AYKGSLDCLVQIYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVLTRAMGCEPGDRLLVPKLLLAGGTSGITSWLSTYPMDVV 213          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2538_SHEEP (Solute carrier family 25 member 38 OS=Ovis aries GN=SLC25A38 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 50/217 (23.04%), Postives = 93/217 (42.86%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFH---RIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIM-------VKLACGSIAGLLGQTFTYPLDVV 698
            PL+ +K  +QT +   H   R+G+   +  + +TE  +G ++G   S+ R VP   +++      +++ +   P  +   +  +I G+ +   A +   P+ +++T+                 S  + Y+ I    R      G RGL+ G   +L    P++G+   FY + K  V   H  D +       V  +CG  AG+L    T P DV+
Sbjct:   47 PLDLLKTRLQTLQPSAHGSRRVGMLALLLTVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTA---LESVILGAGSRSVAGVCMSPITVIKTRYE---------------SGRYGYQSIYAALRSICHSEGFRGLFSGLTATLLRDAPFSGIYLMFYSQTKNVVL--HSTDQLDAVLVPVVNFSCGIFAGILASLVTQPADVI 243          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCATL_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Homo sapiens GN=SLC25A29 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 55/210 (26.19%), Postives = 91/210 (43.33%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI-GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVK--LACGSIAGLLGQTFTYPLDVV 698
            P + VK+ +Q +  E  +  G     K I K E  +G Y+G G+ +  +    AL +       R +          P+   +AG+ AG    +   P++L +T+L  Q    ++            Y+G  DC  Q Y   GLRG+ RG   +L    P  G+ F  Y+ + R +  +    ++V   L  G  +G++    TYP+DVV
Sbjct:   21 PFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRAL------GHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGPAR-----------TYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCEPGDRLLVPKLLLAGGTSGIVSWLSTYPVDVV 213          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
S2539_RAT1.994e-1226.56Solute carrier family 25 member 39 OS=Rattus norve... [more]
MCATL_MOUSE1.994e-1226.67Mitochondrial carnitine/acylcarnitine carrier prot... [more]
S2538_RAT3.401e-1225.58Solute carrier family 25 member 38 OS=Rattus norve... [more]
MCATL_BOVIN3.401e-1226.67Mitochondrial carnitine/acylcarnitine carrier prot... [more]
CMC1_CAEEL3.401e-1232.54Probable calcium-binding mitochondrial carrier K02... [more]
S2538_BOVIN4.441e-1222.58Solute carrier family 25 member 38 OS=Bos taurus G... [more]
S2539_BOVIN5.801e-1228.57Solute carrier family 25 member 39 OS=Bos taurus G... [more]
MCATL_RAT5.801e-1225.71Mitochondrial carnitine/acylcarnitine carrier prot... [more]
S2538_SHEEP7.576e-1223.04Solute carrier family 25 member 38 OS=Ovis aries G... [more]
MCATL_HUMAN7.576e-1226.19Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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