FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_YEAST (Mitochondrial thiamine pyrophosphate carrier 1 OS=Saccharomyces cerevisiae GN=TPC1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 56/220 (25.45%), Postives = 104/220 (47.27%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGS-----IKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPED------HKKDIMVKL--ACGSIAGLLGQTFTYPLDVV 698
            P++ +KI +Q   A  + +  FGS      + + K EG   F++GN       V Y +  + +Y  + R++    P      +  L+ G+FAG T+ + +YP D++RT+L               + +  + R +RD     +K  GL G ++G+  S+  I   A + F  YE ++ +  E+      HKK  +  L  + G+I G++ +  T+PL+ +
Sbjct:   36 PMDTIKIRLQLTPA--NGLKPFGSQVMEVARSMIKNEGIRSFWKGNIPGSLLYVTYGSAQFSSYSLFNRYLT---PFGLEARLHSLVVGAFAGITSSIVSYPFDVLRTRLV----------ANNQMHSMSITREVRD----IWKLEGLPGFFKGSIASMTTITLTASIMFGTYETIRIYCDENEKTTAAHKKWELATLNHSAGTIGGVIAKIITFPLETI 236          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_YEAS7 (Mitochondrial thiamine pyrophosphate carrier 1 OS=Saccharomyces cerevisiae (strain YJM789) GN=TPC1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 56/220 (25.45%), Postives = 104/220 (47.27%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGS-----IKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPED------HKKDIMVKL--ACGSIAGLLGQTFTYPLDVV 698
            P++ +KI +Q   A  + +  FGS      + + K EG   F++GN       V Y +  + +Y  + R++    P      +  L+ G+FAG T+ + +YP D++RT+L               + +  + R +RD     +K  GL G ++G+  S+  I   A + F  YE ++ +  E+      HKK  +  L  + G+I G++ +  T+PL+ +
Sbjct:   36 PMDTIKIRLQLTPA--NGLKPFGSQVMEVARSMIKNEGIRAFWKGNIPGSLLYVTYGSAQFSSYSLFNRYLT---PFGLEARLHSLVVGAFAGITSSIVSYPFDVLRTRLV----------ANNQMHSMSITREVRD----IWKLEGLPGFFKGSIASMTTITLTASIMFGTYETIRIYCDENEKTTAAHKKWELATLNHSAGTIGGVIAKIITFPLETI 236          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2538_XENTR (Solute carrier family 25 member 38 OS=Xenopus tropicalis GN=slc25a38 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 49/214 (22.90%), Postives = 89/214 (41.59%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIG----VFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDI---MVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ VK  +Q  +      G    +     K+ + E  +G +RG   S  R +P   L++      +      F +    P+  ++ G+ +   A +   P  +V+T+                 S ++ Y+ +    +  YK  G RGL+ G   +L    P++G+   FY   K+ VP+D    +   ++   CG +AG+L    T P DV+
Sbjct:   44 PLDLVKTRLQAHQLSASAAGSRPRMLNLFIKVIRNENILGLWRGVSPSFLRCIPGVGLYFSTLYTLKHHF---FSERDPKPLESVMLGAGSRTVAAVCMLPFTVVKTRYE---------------SGKYGYKSVYGALKNIYKTEGPRGLFSGLTATLMRDAPFSGIYLMFYTRAKKLVPQDQIDPLFSPVLNFGCGIVAGILASVATQPADVI 239          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCFX_DICDI (Mitochondrial substrate carrier family protein X OS=Dictyostelium discoideum GN=mcfX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 60/215 (27.91%), Postives = 100/215 (46.51%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI----GVFGSIKKIAKTEGAM-GFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIA-GSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVK--LACGSIAGLLGQTFTYPLDVV 698
            PL+ VK  +Q +R          G+    KK+ K EG + G YRG  +++  I+P  AL  +A  +Y R       D S   + + +A G  AG   V+ T P++LV+ ++    +   K + + VVS                 E G++GLY+G A +L    P++ + F  Y  MK ++ +    +I +   L CG  AG +  + + P DV+
Sbjct:   40 PLDFVKTRLQQQRVSIDGSKQYNGIIDCFKKVIKNEGGVRGLYRGLSSNLIGIIPEKALK-LAMNDYFRTRFQG--DRSYIKLWEEVASGGLAGMCQVVATNPMELVKIRMQVSGLSGKKASLKEVVS-----------------ELGIKGLYKGTASTLLRDVPFSMIYFSIYGRMKHNLTDQETGEIGLPKILLCGITAGSIAASVSTPFDVI 234          

HSP 2 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 46/182 (25.27%), Postives = 80/182 (43.96%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPV---LDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDH 614
            P+E VKI +Q         G   S+K++    G  G Y+G  +++ R VP++ +++  Y   +     +  D   G +     L+ G  AG  A   + P D+++T++  +   +              Y+GI DCFR+T +  G + L++G  P +  I P  G+    YE  K      H
Sbjct:  139 PMELVKIRMQVSGLS----GKKASLKEVVSELGIKGLYKGTASTLLRDVPFSMIYFSIYGRMKH----NLTDQETGEIGLPKILLCGITAGSIAASVSTPFDVIKTRIQVKPGPNDPH-----------YKGIADCFRKTIQSEGPKALFKGVLPRVCIISPLFGITLVVYEIQKSFYASTH 301          

HSP 3 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  315 DLIAGSFAGGTAVLFTYPLDLVRTKLAYQ--IVDSSKKNFQGVVSAEHVYRGIRDCFRQTYK-ESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKK-DIMVKLACGSIAGLLGQTFTYPLDVV 698
            +LIAG+ AG       +PLD V+T+L  Q   +D SK+           Y GI DCF++  K E G+RGLYRG + +L GI P   LK    +  +     D     +  ++A G +AG+     T P+++V
Sbjct:   23 NLIAGAIAGVIGSSVVFPLDFVKTRLQQQRVSIDGSKQ-----------YNGIIDCFKKVIKNEGGVRGLYRGLSSNLIGIIPEKALKLAMNDYFRTRFQGDRSYIKLWEEVASGGLAGMCQVVATNPMELV 143          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: YIA6_YEAST (Uncharacterized mitochondrial carrier YIL006W OS=Saccharomyces cerevisiae GN=YIL006W PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 54/207 (26.09%), Postives = 95/207 (45.89%), Query Frame = 3
Query:  102 VQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHV--YRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK----RHVPEDHKKDIMVK--LACGSIAGLLGQTFTYPLDVV 698
            +QTR    +  G+ G++  I + EG  G Y+G    V    P   +++  YE  +++    FP      V    A   AG  +   T P+ +V+T+L  Q       N       EH   Y+G  D FR+ + + G + LY G  PSL G+F +  + F  YE++K     +  E++   I ++  +   S++ ++    TYP +++
Sbjct:  110 LQTRFENPYYRGIMGTLSTIVRDEGPRGLYKGLVPIVLGYFPTWMIYFSVYEFSKKFFHGIFPQFDF--VAQSCAAITAGAASTTLTNPIWVVKTRLMLQ------SNL-----GEHPTHYKGTFDAFRKLFYQEGFKALYAGLVPSLLGLF-HVAIHFPIYEDLKVRFHCYSRENNTNSINLQRLIMASSVSKMIASAVTYPHEIL 302          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TXTP_HUMAN (Tricarboxylate transport protein, mitochondrial OS=Homo sapiens GN=SLC25A1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 48/185 (25.95%), Postives = 85/185 (45.95%), Query Frame = 3
Query:   78 PLERVKILV---QTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD 623
            P+E +K+     QT     +R G F  +++I + +G  G Y+G  A+V +     A+ +      R W     P+    P++  + G+ AG  +V    PLD+++T++            QG+ +  H YR   DC  Q  K+ GL+  Y+G  P L  +     + F  Y+E+ + + +  K D
Sbjct:  142 PMETIKVKFIHDQTSPNPKYR-GFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRM------------QGLEA--HKYRNTWDCGLQILKKEGLKAFYKGTVPRLGRVCLDVAIVFVIYDEVVKLLNKVWKTD 311          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S238A_DANRE (Solute carrier family 25 member 38-A OS=Danio rerio GN=slc25a38a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 50/214 (23.36%), Postives = 92/214 (42.99%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFH----RIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLA---CGSIAGLLGQTFTYPLDVV 698
            PL+ VK  +QT  +       R+G+      + +TE  +G +RG   S  R +P   +++  Y   ++     F   + GP+  ++ G+ A   A +F  P+ +++T+                 S  + Y G+    R   +  G + L+ G   +L    P++G+    Y + K  +P +  +     +A   CG +AG+L    T P DVV
Sbjct:   29 PLDLVKTRLQTLHSGVQPGTGRVGMVTVFVNVLRTEKLLGLWRGVSPSFVRCIPGVGIYFSTYFTLKQHY---FSSGAPGPLQAVLLGAGARCVAGVFMLPVTVIKTRFE---------------SGRYRYSGVFGALRSVCQTEGPKALFSGLMATLLRDAPFSGIYVMIYSQTKNLLPPEISQSSYAPVANFSCGVLAGVLASVLTQPADVV 224          

HSP 2 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 44/171 (25.73%), Postives = 76/171 (44.44%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEM 590
            P+  +K   ++ R  +   GVFG+++ + +TEG    + G  A++ R  P++ ++ M Y + +  +       S  PV +   G  AG  A + T P D+V+T +                 +  V+    D  R  YKE GL G +RGA P        A + +  YE++
Sbjct:  126 PVTVIKTRFESGRYRYS--GVFGALRSVCQTEGPKALFSGLMATLLRDAPFSGIYVMIYSQTKNLLPPEISQSSYAPVANFSCGVLAGVLASVLTQPADVVKTHIQV---------------SPDVFSRTSDVVRYIYKEHGLVGFFRGAVPRSLRRTMMAAMAWTVYEQL 279          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: SFC1_YEAST (Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae GN=SFC1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 64/217 (29.49%), Postives = 100/217 (46.08%), Query Frame = 3
Query:   78 PLERVKILVQTRR--AEFHRIGVFGSIKK---IAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPD-VSRGPVLDLIAGSFAGGT-AVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMV--KLAC-GSIAGLLGQTFTYPLDVV 698
            PL+ +K+ +Q  R  A    +   G IK    I + EG +  Y+G GA V  I+P  A+ + +YE YR  ++      VS G     +AG  AG T AVL   P+++V+ +L  Q +  S+ N      A   Y           KE G+  LYRG + +        G  F  Y ++K  +   H+ D++   + +C G I+G +G     PLD +
Sbjct:   30 PLDTIKVRMQIYRRVAGIEHVKPPGFIKTGRTIYQKEGFLALYKGLGAVVIGIIPKMAIRFSSYEFYRTLLVNKESGIVSTGNT--FVAGVGAGITEAVLVVNPMEVVKIRLQAQHLTPSEPN------AGPKYNNAIHAAYTIVKEEGVSALYRGVSLTAARQATNQGANFTVYSKLKEFLQNYHQMDVLPSWETSCIGLISGAIGPFSNAPLDTI 238          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2539_MOUSE (Solute carrier family 25 member 39 OS=Mus musculus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 51/192 (26.56%), Postives = 86/192 (44.79%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHV-YRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD---IMVKLACGSIAGLLGQTFTYPLDVV 698
            G   +  KI + EG    + G  A++   VP  A+++ AY++ + +  L    ++      ++AG+ A    V    PL+LVRTKL                 A+HV YR +    +    + G R L+ G  P+     P++ L ++ YE +K  +     KD   + +    G I+G++  T T P DVV
Sbjct:  106 GTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAF--LCGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKL----------------QAQHVSYRELASSVQAAVTQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLSGLRPKDQTSVGISFVAGGISGMVAATLTLPFDVV 279          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2539_DANRE (Solute carrier family 25 member 39 OS=Danio rerio GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 49/194 (25.26%), Postives = 82/194 (42.27%), Query Frame = 3
Query:  126 HRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHK---KDIMVKLACGSIAGLLGQTFTYPLDVV 698
            H  G   +  KI   EG    + G   ++   VP   +++  Y++ R ++  S      G  + LIAG  A   AV    PL+LVRTK+                S    Y  +  C R +  + G   L+RG  P++    P++ L ++ YE +K  + E ++       +    G+++G +    T P DVV
Sbjct:  101 HFSGTLDAFVKITHNEGLRSLWSGLPPTLVMAVPATVIYFTCYDQLRDFLCYSMG--YHGDHIPLIAGGLARLGAVSVISPLELVRTKMQ---------------SRRLQYSELMVCIRSSVAQDGWLSLWRGWGPTVLRDVPFSALYWFNYELVKAQLCEHYRTPQASFTISFTAGAVSGAIAAVLTLPFDVV 277          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
TPC1_YEAST9.894e-1225.45Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_YEAS79.894e-1225.45Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2538_XENTR9.894e-1222.90Solute carrier family 25 member 38 OS=Xenopus trop... [more]
MCFX_DICDI1.292e-1127.91Mitochondrial substrate carrier family protein X O... [more]
YIA6_YEAST1.688e-1126.09Uncharacterized mitochondrial carrier YIL006W OS=S... [more]
TXTP_HUMAN1.688e-1125.95Tricarboxylate transport protein, mitochondrial OS... [more]
S238A_DANRE1.688e-1123.36Solute carrier family 25 member 38-A OS=Danio reri... [more]
SFC1_YEAST2.204e-1129.49Succinate/fumarate mitochondrial transporter OS=Sa... [more]
S2539_MOUSE2.879e-1126.56Solute carrier family 25 member 39 OS=Mus musculus... [more]
S2539_DANRE2.879e-1125.26Solute carrier family 25 member 39 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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