FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ODC_SCHPO (Probable mitochondrial 2-oxodicarboxylate carrier OS=Schizosaccharomyces pombe GN=SPAC328.09 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 53/209 (25.36%), Postives = 88/209 (42.11%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKK--DIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ VK  +Q    +    G F  +KKI K EG    YRG    +    P  AL + + + Y +     F      P L ++ GS AG T      P +L++ +L  Q V ++ K           Y G  DCF +  K+  +  LY G   +++    +    F   ++++  +     +  +I   L  G+I G+ G   + P DV+
Sbjct:   28 PLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPALSILTGSCAGFTETFVVVPFELMKIRL--QDVKNASK-----------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAGYFGVIQKIRNSLTPASSRIGEIRNNLIAGTIGGIFGTFLSTPFDVI 223          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCP62_BOVIN (Putative mitochondrial carrier protein FLJ44862 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 3
Query:  159 IAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP--VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDH 614
            I +TEG  G YRG  A + R VP   L+++ Y     WI    P+   GP      +AG  AG  +     P+D+V+++L    V  +K            YRG+ DC  Q+Y++ GL+  +RG   +    FP +   F  YE   + +  DH
Sbjct:  168 IVRTEGLAGLYRGASAMLLRDVPGYCLYFIPYVFLSDWIT---PEACAGPSPCAVWLAGGMAGAISWGTATPMDVVKSRLQADGVYVNK------------YRGVLDCMSQSYQKEGLKVFFRGITVNAVRGFPMSAAMFLGYELSLQAIRGDH 306          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: HDCPA_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog A OS=Danio rerio GN=hdmcpa PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 58/210 (27.62%), Postives = 92/210 (43.81%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTA-VLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKK--DIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ VK+ +QT++      G++  I    + EG  GF++G    +  I   +++ +  Y    +   LS+   +    LD+     AGG A V    P D+V+ +L  Q    S+ +     S +  Y G   C     +E GL GLYRGA P      P     F  Y  +   +  D +K  +  V L  G +AG+ G     P+DV+
Sbjct:   22 PLDTVKVRIQTQK---QFTGIWQCIVLTIRKEGVHGFFKGMFLPITTISMTSSVVFGTYRNCLQ--ALSYIRKAENTKLDVFMSGLAGGVAQVSVMSPGDIVKVRLQCQT--ESRHSVNPKYSVKPKYSGPIHCLLSICREQGLSGLYRGALPLALRDGPSFATYFLTYHTLCARLTPDGQKEPEWTVVLLSGGVAGMSGWAVGTPMDVI 224          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 58/222 (26.13%), Postives = 94/222 (42.34%), Query Frame = 3
Query:   78 PLERVKILVQTR------RAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRW------IILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYE---EMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ +K+ +QT           +R G F    K  K EG  G Y+G  A +  + P  A+ +  Y   +R         L++P +        +AGSF+G  + L   P + ++  L  Q         QG    E  Y G+ DC  + YKE GLR +++G+  ++    P  GL F  YE   ++ +   E  +      +  G +AG+       P DV+
Sbjct:   35 PLDTIKVRLQTMPRPAPGEQPLYR-GTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQI-------FVAGSFSGLFSTLIMAPGERIKVLLQTQ---------QGQ-GGERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQDVAKSKSETGQISTASTIFAGGVAGMAYWILGMPADVL 238          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: CMC2_MOUSE (Calcium-binding mitochondrial carrier protein Aralar2 OS=Mus musculus GN=Slc25a13 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 48/173 (27.75%), Postives = 79/173 (45.66%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR 596
            PLE VKI +Q   A     G   S   + +  G  G Y+G  A   R +P++A+++  Y   +         VS G +L  +AG+ AG  A     P D+++T+L                + +  Y G+ DCFR+  +E G + L++G A  ++   P  G+    YE ++R
Sbjct:  449 PLEIVKIRLQV--AGEITTGPRVSALSVVRDLGFFGIYKGAKACFLRDIPFSAIYFPCYAHVKASFANEDGQVSPGSLL--LAGAIAGMPAASLVTPADVIKTRLQV-----------AARAGQTTYNGVTDCFRKILREEGPKALWKGVAARVFRSSPQFGVTLLTYELLQR 606          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TXTP_BOVIN (Tricarboxylate transport protein, mitochondrial OS=Bos taurus GN=SLC25A1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 46/185 (24.86%), Postives = 84/185 (45.41%), Query Frame = 3
Query:   78 PLERVKILV---QTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD 623
            P+E +K+     QT  +  +R G F  +++I + +G  G Y+G  A+V +      + +      R W     P+    P++  + G+ AG  +V    PLD+++T++            QG+ +  H YR   DC  Q  +  GL+  Y+G  P L  +     + F  Y+E+ + + +  K D
Sbjct:  142 PMETIKVKFIHDQTSASPKYR-GFFHGVREIVREQGLKGTYQGLTATVLKQGSNQGIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRM------------QGLEA--HKYRNTLDCGLQILRNEGLKAFYKGTVPRLGRVCLDVAIVFIIYDEVVKLLNKVWKAD 311          

HSP 2 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 40/116 (34.48%), Postives = 58/116 (50.00%), Query Frame = 3
Query:  318 LIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPE-DHKKDIMVKLACGSIAGL 662
            ++AG  AGG  +  T+P + V+T+L         +           YRGI DC RQT +  GL GLYRG +  LYG  P A ++F  +E +  H+ +   + D    L CG  AG+
Sbjct:   29 ILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPR-----------YRGIGDCVRQTVRSHGLLGLYRGLSSLLYGSIPKAAVRFGTFEFLSNHMRDAQGRLDSTRGLLCGLGAGV 133          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2538_MOUSE (Solute carrier family 25 member 38 OS=Mus musculus GN=Slc25a38 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 51/215 (23.72%), Postives = 91/215 (42.33%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEF---HRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPE-----DHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ +K  +Q  +       R+G+     K+ +TE  +G ++G   S+ R VP   +++      +++ +   P  +   V   I G  +   A +   P+ +++T+              G  S E +Y  +R      Y   G RGL+RG   +L    P++GL   FY + +  V       D     ++  +CG  AG+L    T P DV+
Sbjct:   67 PLDLLKTRLQALQPSDLGPRRVGMLAVFLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSSKQYFLRGHPPTALESV---ILGMGSRSVAGVCMSPITVIKTRYE-----------SGTYSYESIYAALRSI----YCSEGHRGLFRGLTATLLRDAPFSGLYLMFYSQTRTAVLHGTAQLDAALIPLINFSCGIFAGVLASLVTQPADVI 263          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCFS_DICDI (Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 56/215 (26.05%), Postives = 93/215 (43.26%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLD--LIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVP-------EDHKKDIMVKLACGSIAGLLGQTFTYPLDV 695
            P + +++ +QT       IG+    +   K EG  G Y+G  + +  ++   A+ +  Y + +   +L   D +    +    IAG FAG  A +   P++LV+ +L  Q     K            Y+G  DC  Q  KE G+RG YRG  P++   F      F  YE  KR+         +D + ++   +  G + G+   T  YP+DV
Sbjct:   26 PFDTIRVRLQTSNTP---IGIMECFRNTIKYEGFSGLYKGVTSPLFGMMFETAVLFAGYGQMK---VLLQKDENTPLTVGQCAIAGGFAGVGASVVLTPVELVKCRLQVQTTGPQK------------YKGSLDCLVQILKEGGIRGAYRGFTPTIAREFVGNMAFFSTYETCKRYFKNKENKPNDDDELNLPALIISGGLGGMAYWTVLYPVDV 222          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2544_MOUSE (Solute carrier family 25 member 44 OS=Mus musculus GN=Slc25a44 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 60/215 (27.91%), Postives = 96/215 (44.65%), Query Frame = 3
Query:   81 LERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRG-PVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQ--GVVSAEHV--YRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFY----EEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            L R ++ VQ  ++ +H  G F +  KI + +G  G YRG   +   ++     +   YE  R+++     D S+   V  L+AG  A   A   T P+D+V   L  Q        FQ  G +  + V  +   +D  RQ  +  GLRG YRG   SL    P + + + FY    E++ R  P++    I+ +   G +A       T P+DV+
Sbjct:   40 LIRTRLQVQKGKSLYH--GTFDAFVKILRADGVAGLYRGFLVNTFTLIS-GQCYVTTYELTRKFVA----DYSQSNTVKSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVHGNLEGQGVIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAEQLSRLCPQE-CPHIVFQAISGPLAAATASILTNPMDVI 246          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2538_XENLA (Solute carrier family 25 member 38 OS=Xenopus laevis GN=slc25a38 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 47/214 (21.96%), Postives = 88/214 (41.12%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIG----VFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDI---MVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ VK  +Q  +      G    +   + K+ + E  +G ++G   S  R +P   L++      +      F +    P+  ++ G+ +   A +   P  +V+T+                 S ++ Y  +    +  YK  G RGL+ G   +L    P++G+   FY   K+  P D    +   ++  +CG +AG+L    T P DV+
Sbjct:   44 PLDLVKTRIQAHQLSASAAGSRPRMLNLLIKVVRNENILGLWKGVSPSFLRCIPGVGLYFSTLYTLKHHF---FSERDPKPLESVMLGAGSRTVAAVCMLPFTVVKTRYE---------------SGKYGYNSVYGALKAIYKTEGPRGLFSGLTATLMRDAPFSGIYLMFYTRAKKLAPHDQIDPLFSPVLNFSCGIVAGILASVATQPADVI 239          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ODC_SCHPO2.879e-1125.36Probable mitochondrial 2-oxodicarboxylate carrier ... [more]
MCP62_BOVIN2.879e-1130.52Putative mitochondrial carrier protein FLJ44862 ho... [more]
HDCPA_DANRE2.879e-1127.62Hepatocellular carcinoma down-regulated mitochondr... [more]
COLT_DROME2.879e-1126.13Congested-like trachea protein OS=Drosophila melan... [more]
CMC2_MOUSE2.879e-1127.75Calcium-binding mitochondrial carrier protein Aral... [more]
TXTP_BOVIN3.760e-1124.86Tricarboxylate transport protein, mitochondrial OS... [more]
S2538_MOUSE3.760e-1123.72Solute carrier family 25 member 38 OS=Mus musculus... [more]
MCFS_DICDI3.760e-1126.05Mitochondrial substrate carrier family protein S O... [more]
S2544_MOUSE4.910e-1127.91Solute carrier family 25 member 44 OS=Mus musculus... [more]
S2538_XENLA4.910e-1121.96Solute carrier family 25 member 38 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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