FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3552 contig Ccv1_Contig3552:189..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: PM34_HUMAN (Peroxisomal membrane protein PMP34 OS=Homo sapiens GN=SLC25A17 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 54/186 (29.03%), Postives = 88/186 (47.31%), Query Frame = 3
Query:  156 KIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRR-WIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKK----DIMVKLACGSIAGLLGQTFTYPLDVV 698
            +I K EG +  YRG    ++ +     +++  +   +  W+        +    DL+ G  AG   VL T PL +V T+L  Q    +K   + +V     Y+GI D F Q  ++ G+  L+ G  PSL  +F  A ++F FYE +KR + +   K    D+ +    G++A  +  T TYPL  V
Sbjct:   54 EIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKALWVKGQHSTTGK----DLVVGFVAGVVNVLLTTPLWVVNTRLKLQ---GAKFRNEDIVPTN--YKGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA-IQFMFYEGLKRQLLKKRMKLSSLDVFI---IGAVAKAIATTVTYPLQTV 226          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: AGC1_ASHGO (Mitochondrial aspartate-glutamate transporter AGC1 OS=Ashbya gossypii GN=AGC1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 56/218 (25.69%), Postives = 93/218 (42.66%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQ---IVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHV----PED----HKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P++ VK  +Q +R           + KI   EG  G Y G G  +  + P  A+     +  R    L+  D       ++I+G+ AG   V+FT PL++V+ +L  +   + D+++ +   +                  K  GL GLYRGA   L    P++ + F  Y  +K +V    P+D    +K +    L  G +AG+     T P DV+
Sbjct:  543 PIDMVKTRMQAQRDFSKYKNSIDCLLKILSKEGVRGLYSGLGPQLIGVAPEKAIKLTVNDHMRA--TLAGRDGKLSLPCEIISGATAGACQVVFTNPLEIVKIRLQVKSDYVADAARNSVNAI---------------SVIKNLGLIGLYRGAGACLLRDIPFSAIYFPTYAHIKSNVFNFDPKDSDKRNKLNTWQLLVSGGLAGMPAAFLTTPFDVI 743          

HSP 2 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIA--KTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFP-DVSRGPVLD----LIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYE 584
            PLE VKI +Q + +++       S+  I+  K  G +G YRG GA + R +P++A+++  Y   +  +    P D  +   L+    L++G  AG  A   T P D+++T+L    +D  K         E VY GI D  R   KE G++  ++G    +    P  G     YE
Sbjct:  637 PLEIVKIRLQVK-SDYVADAARNSVNAISVIKNLGLIGLYRGAGACLLRDIPFSAIYFPTYAHIKSNVFNFDPKDSDKRNKLNTWQLLVSGGLAGMPAAFLTTPFDVIKTRLQ---IDPKK--------GESVYNGIWDAARTILKEEGIKSFFKGGPARVLRSSPQFGFTLAAYE 800          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: YD1K_SCHPO (Uncharacterized mitochondrial carrier C4G9.20c OS=Schizosaccharomyces pombe GN=SPAC4G9.20c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 52/181 (28.73%), Postives = 85/181 (46.96%), Query Frame = 3
Query:   78 PLERVKILVQTRRAE---FHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILS--FPDVSRGPVLDL-IAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHV 602
            P+E V+I +Q +  +   +H  G +  IKKI+   G  G  +G   + AR      ++++AYE   +  +      D S+ P   L + G+ AG    L  YP D+V++K+             G +S +  Y+    C +  Y ++GLRG YRG  P L    P   + FY YE + +H+
Sbjct:  132 PVEHVRIRLQIQTGKNVLYH--GPWDCIKKISSQYGLSGIMKGYNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQTPGWKLCVFGAGAGYAMWLAAYPFDIVKSKI----------QTDGFLS-KATYKNSWQCAKGIYTKAGLRGFYRGFVPVLVRAAPANAVTFYVYETVSQHI 299          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2540_DANRE (Solute carrier family 25 member 40 OS=Danio rerio GN=slc25a40 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 40/169 (23.67%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYE 584
            PLE ++  +Q+ +  +  +     I+   K EG    +RG G ++ R VP++A+++  YE+ + W+   +        +   AG+ +G  A + T P D+V+TK   ++ +         VS+           ++   E+G+ GL+ G  P L  + P   +    YE
Sbjct:  162 PLELIRTKMQSEKQSYREMSAV--IRSALKNEGLRSLWRGWGPTLLRDVPFSAMYWFNYEKGKWWLCKRYSCSEPTVAITFTAGALSGSIASIITLPFDVVKTKRQVEMGELQTMKLSTQVSSSTC-----SVMKRIVAENGVSGLFAGFMPRLIKVAPACAIMISTYE 323          

HSP 2 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 48/198 (24.24%), Postives = 86/198 (43.43%), Query Frame = 3
Query:  114 RAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDH---KKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            +A  H  G   +  KI + EG    + G   ++   VP   +++  Y++    + L   D  R  +  L AG+ A   +     PL+L+RTK+                S +  YR +    R   K  GLR L+RG  P+L    P++ + ++ YE+ K  + + +   +  + +    G+++G +    T P DVV
Sbjct:   80 KAPGHFSGTLDAFLKIIRMEGIRSLWSGLPPTLIMAVPATVIYFTCYDQLFALLKLKMGD--RSDLAPLFAGAIARVGSATVISPLELIRTKMQ---------------SEKQSYREMSAVIRSALKNEGLRSLWRGWGPTLLRDVPFSAMYWFNYEKGKWWLCKRYSCSEPTVAITFTAGALSGSIASIITLPFDVV 260          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2539_HUMAN (Solute carrier family 25 member 39 OS=Homo sapiens GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 55/196 (28.06%), Postives = 85/196 (43.37%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTY----PLDLVRTKLAYQIVDSSKKNFQGVVSAEHV-YRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD---IMVKLACGSIAGLLGQTFTYPLDVV 698
            G   +  KI + EG    + G  A++   VP  A+++ AY++ + ++        R    DL A   AG  A L T     PL+L+RTKL                 A+HV YR +  C R    + G R L+ G  P+     P++ L ++ YE +K  +     KD   + +    G I+G +    T P DVV
Sbjct:  106 GTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFLC------GRALTSDLYAPMVAGALARLGTVTVISPLELMRTKL----------------QAQHVSYRELGACVRTAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLNGLRPKDQTSVGMSFVAGGISGTVAAVLTLPFDVV 279          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: CMC2_HUMAN (Calcium-binding mitochondrial carrier protein Aralar2 OS=Homo sapiens GN=SLC25A13 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 48/173 (27.75%), Postives = 79/173 (45.66%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR 596
            PLE VKI +Q   A     G   S   + +  G  G Y+G  A   R +P++A+++  Y   +         VS G +L  +AG+ AG  A     P D+++T+L                + +  Y G+ DCFR+  +E G + L++GA   ++   P  G+    YE ++R
Sbjct:  448 PLEIVKIRLQV--AGEITTGPRVSALSVVRDLGFFGIYKGAKACFLRDIPFSAIYFPCYAHVKASFANEDGQVSPGSLL--LAGAIAGMPAASLVTPADVIKTRLQV-----------AARAGQTTYSGVIDCFRKILREEGPKALWKGAGARVFRSSPQFGVTLLTYELLQR 605          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC_DICDI (Probable mitochondrial thiamine pyrophosphate carrier OS=Dictyostelium discoideum GN=mcfK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 55/245 (22.45%), Postives = 101/245 (41.22%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI----------------GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEE-----------YRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYK-----ESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK------RHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ VKI +Q +R + +                  G+  ++ K+ + EG    ++GN ++    V YAA+ +  Y E           +++      P+      + +I G+ AG  + + +YP D++RT +   + + +K N                 F+QT+K       G   L+ G   SL+ I P  G +F FYE  K           ++  + + +  CG ++G + +    P DVV
Sbjct:   35 PLDVVKIRLQLQRTQLNNNSNNNNKIIGKENVNYRGIINTMSKVIREEGIRSLWKGNFSAELLWVTYAAIQFSTYNEIIGILDPEYRKHQQRTDKDKPNYKPSSSITMIGGASAGILSTIVSYPFDIIRTNI---VNNHNKTN-----------------FKQTFKTIIARNGGYSNLFSGINSSLFQIVPQMGFQFTFYETFKFISNKYTSSVNNNNNNPLNQFTCGLLSGAISKFLVLPFDVV 259          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2535_DANRE (Solute carrier family 25 member 35 OS=Danio rerio GN=slc25a35 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 3
Query:  126 HRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP-VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK 593
            HR G+  ++  I K  G +G +RG  A++ R+   +A     +   +  ++      S G  ++ L AG  +    VL   P D+V T+L  Q VD   K          +YRG  DCF +T K+ G+ GLY+G   S + + P+  L   F+ E++
Sbjct:  145 HR-GMTNALFAIHKQHGILGLWRGASAAIPRVSVGSAAQLATFSASKE-MVNDLQVFSEGSWLIALSAGMISSVVVVLAMTPFDVVSTRLYNQPVDHLGKGM--------LYRGFVDCFSKTLKKEGMTGLYKGLGASYFRLGPHTILSLLFWNELR 291          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCP62_HUMAN (Putative mitochondrial carrier protein FLJ44862 OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/157 (29.30%), Postives = 71/157 (45.22%), Query Frame = 3
Query:  150 IKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP--VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDH 614
            I  I + EG  G YRG  A + R VP   L+++ Y     WI    P+   GP      +AG  AG  +     P+D+V+++L    V  +K            Y+G+ DC  Q+Y++ GL+  +RG   +    FP +   F  YE   + +  DH
Sbjct:  165 ITTIVRNEGLAGLYRGASAMLLRDVPGYCLYFIPYVFLSEWIT---PEACTGPSPCAVWLAGGMAGAISWGTATPMDVVKSRLQADGVYLNK------------YKGVLDCISQSYQKEGLKVFFRGITVNAVRGFPMSAAMFLGYELSLQAIRGDH 306          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
PM34_HUMAN4.910e-1129.03Peroxisomal membrane protein PMP34 OS=Homo sapiens... [more]
AGC1_ASHGO4.910e-1125.69Mitochondrial aspartate-glutamate transporter AGC1... [more]
YD1K_SCHPO6.413e-1128.73Uncharacterized mitochondrial carrier C4G9.20c OS=... [more]
S2540_DANRE6.413e-1123.67Solute carrier family 25 member 40 OS=Danio rerio ... [more]
S2539_HUMAN6.413e-1128.06Solute carrier family 25 member 39 OS=Homo sapiens... [more]
CMC2_HUMAN6.413e-1127.75Calcium-binding mitochondrial carrier protein Aral... [more]
TPC_DICDI8.376e-1122.45Probable mitochondrial thiamine pyrophosphate carr... [more]
S2535_DANRE8.376e-1129.30Solute carrier family 25 member 35 OS=Danio rerio ... [more]
MCP62_HUMAN8.376e-1129.30Putative mitochondrial carrier protein FLJ44862 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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