FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3552 contig Ccv1_Contig3552:189..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 68/212 (32.08%), Postives = 113/212 (53.30%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK-----RHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R+K+L+Q   +  + + + G   ++ +  GA   +RGNG +V +I P +A+ +MAYE+ +R +I S  +  R     L+AGS AG  A    YP+++++T++A       +K  Q        Y G+ DC R+     G+   Y+G  P++ GI PYAG+    YE +K     R+        + V LACG+++   GQ  +YPL +V
Sbjct:  206 PLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKR-LIGSDQETLRIHE-RLVAGSLAGAIAQSSIYPMEVLKTRMAL------RKTGQ--------YSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYPLALV 401          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 63/212 (29.72%), Postives = 111/212 (52.36%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-----IMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R+K+++Q   ++ +   +   +K++ K  G    +RGNG +V +I P  A+ + AYE+Y++  + +      G     IAGS AG TA    YP+++++T+LA              V     Y G+ DC ++  +  G+R  Y+G  P++ GI PYAG+    YE +K    +++  D     ++V L CG+ +   GQ  +YPL ++
Sbjct:  214 PLDRLKVMMQVHGSKGNA-NIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKK--LFTSESGKLGTAERFIAGSLAGATAQTSIYPMEVLKTRLA--------------VGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLKTFWLQNYATDSANPGVLVLLGCGTASSTCGQLASYPLALI 408          

HSP 2 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP-VLDLIAGSFAGGTA-VLFTYPLDLVRTKLAYQ--IVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK 593
            G+F   KKI + EG   FY+G   ++  I+PYA +    YE  + + + ++   S  P VL L+    A  T   L +YPL L+RT++  Q  I  + + N  G+             FR+   + G  GLYRG AP+   + P   + +  YE+MK
Sbjct:  325 GMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLKTFWLQNYATDSANPGVLVLLGCGTASSTCGQLASYPLALIRTRMQAQASIEGAPQLNMGGL-------------FRKIVAKEGFFGLYRGIAPNFLKVLPAVSISYVVYEKMK 468          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 67/212 (31.60%), Postives = 114/212 (53.77%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK-----RHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R+K+L+Q   +  + + + G   ++ +  GA   +RGNG +V +I P +A+ +MAYE+ +R ++ S  +  R     L+AGS AG  A    YP+++++T++A       +K  Q        Y G+ DC ++   + G+   Y+G  P++ GI PYAG+    YE +K     R+        + V LACG+I+   GQ  +YPL +V
Sbjct:  206 PLDRLKVLMQVHASRSNNMCIIGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKR-LVGSDQETLRIHE-RLVAGSLAGAIAQSSIYPMEVLKTRMAL------RKTGQ--------YSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALV 401          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: EAAC_ARATH (Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 67/213 (31.46%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   78 PLERVKILVQT------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R+K+L+QT      +++    IG   +I  IAK EG  G+++GN   V R++PY+A+  +AYE Y+   +    D     +  L AG+ AG T+ L TYPLD++R +LA                 E  YR +        ++ G+   Y G  PSL GI PY  + F  ++ +K+ +PE+++K     L    ++  +     YPLD V
Sbjct:  107 PLDRIKLLMQTHGIRLGQQSAKKAIGFIEAITLIAKEEGVKGYWKGNLPQVIRVLPYSAVQLLAYESYKN--LFKGKDDQLSVIGRLAAGACAGMTSTLLTYPLDVLRLRLA----------------VEPRYRTMSQVALSMLRDEGIASFYYGLGPSLVGIAPYIAVNFCIFDLVKKSLPEEYRKKAQSSLLTAVLSAGIATLTCYPLDTV 301          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 59/211 (27.96%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK----RHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P +R+K+ +Q    + +++GV   +  +    G   F+RGNG +V +I P +A+ +M Y++ +RW+           +  L+AGS AG  +    YP+++++T+LA +      K             G+     + Y + G++  Y+G  P+L GI PYAG+    YE +K    ++  E  +  ++  LACG+ +   GQ  +YPL +V
Sbjct:  264 PFDRIKVYLQVNSTKTNKLGVVSCVHLLHAEGGIKSFWRGNGINVIKIAPESAMKFMCYDQIKRWMQEYKGGAELSTIERLLAGSSAGAISQTAIYPMEVMKTRLALRRTGQLDK-------------GMFHFAHKMYTKEGIKCFYKGYLPNLLGIIPYAGIDLTVYESLKSMYTKYYTEHTEPGVLALLACGTCSSTCGQLASYPLALV 461          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 61/211 (28.91%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK----RHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P +R+K+ +Q    + +++GV   +  +    G   F+RGNG +V +I P +A+ +M+Y++ +RWI              L AGS AG  +    YP+++++T+LA +                 + RG+     + Y + G+R  Y+G  P+L GI PYAG+    YE +K    ++  E  +  ++  LACG+ +   GQ  +YPL +V
Sbjct:  265 PFDRIKVYLQVNSTKTNKLGVVSCVHLLHAEGGLKSFWRGNGINVIKIAPESAMKFMSYDQIKRWIQEYKGGAELTTYERLFAGSSAGAISQTAIYPMEVMKTRLALR-------------RTGQLDRGMIHFAHKMYDKEGIRCFYKGYLPNLLGIIPYAGIDLTVYETLKSCYTQYYTEHTEPGVLALLACGTCSSTCGQLASYPLALV 462          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 62/212 (29.25%), Postives = 106/212 (50.00%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR-----HVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P +R+K+ +Q   ++ +R+GV   +K +    G   F+RGNG +V +I P +A+ +M Y++ +R I     +        L AGS AG  +    YP+++++T+LA +                 + RGI     + Y + G+R  Y+G  P+L GI PYAG+    YE +KR     +     +  ++  LACG+ +   GQ  +YP  +V
Sbjct:  268 PFDRIKVYLQVNSSKTNRLGVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEISTFERLCAGSAAGAISQSTIYPMEVMKTRLALR-------------KTGQLDRGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGIDLAIYETLKRTYVRYYETNSSEPGVLALLACGTCSSTCGQLSSYPFALV 466          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT2_BOVIN (ADP/ATP translocase 2 OS=Bos taurus GN=SLC25A5 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 72/218 (33.03%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   78 PLERVKILVQTRRA------EFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVS----RGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVK-LACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q + A      +    G+   + +I K +G + F+RGN A+V R  P  AL++   ++Y++ I L   D      R    +L +G  AG T++ F YPLD  RT+LA  +         G   AE  +RG+ DC  + YK  G+RGLY+G   S+ GI  Y    F  Y+  K  +P+     I +  +   S+  + G T +YP D V
Sbjct:   28 PIERVKLLLQVQHASKQITADKQYKGIIDCVVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQ-IFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV---------GKAGAEREFRGLGDCLVKIYKSDGIRGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHIFISWMIAQSVTAVAGLT-SYPFDTV 234          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC_MOUSE (Mitochondrial thiamine pyrophosphate carrier OS=Mus musculus GN=Slc25a19 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 67/221 (30.32%), Postives = 112/221 (50.68%), Query Frame = 3
Query:   78 PLERVKILVQTR---------RAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRH----VPEDHKKDIMVK-LACGSIAGLLGQTFTYPLDVV 698
            PL+ +KI  Q +          A++H  G+F + K+I + EG   F++G+  +    + Y A+ ++A+EE    +  +    +       + G  + GTA L  +P+D++RT+LA Q                 +Y  +R+  R  YK  G    Y+G  P++  IFPYAGL+F  Y  +KR     +P D K+   +K L CG  +G++ +TFTYPLD++
Sbjct:   35 PLDVIKIRFQLQIERLCPSDPNAKYH--GIFQAAKQILQEEGPRAFWKGHVPAQILSIGYGAVQFLAFEELTELLYQANLYQTHQFSAHFVCGGLSAGTATLTVHPVDVLRTRLAAQ-------------GEPKIYNNLREAIRTMYKTEGPFVFYKGLTPTVIAIFPYAGLQFSCYRSLKRAYDWLIPPDGKQTGNLKNLLCGCGSGVISKTFTYPLDLI 240          

HSP 2 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  147 SIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRR---WIILSFPDVSR-GPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYE 584
            +I+ + KTEG   FY+G   +V  I PYA L +  Y   +R   W+I   PD  + G + +L+ G  +G  +  FTYPLDL++ +L     + ++  F  V S    YRG+ D  +Q  +E G RG ++G +PSL       G  F++YE
Sbjct:  161 AIRTMYKTEGPFVFYKGLTPTVIAIFPYAGLQFSCYRSLKRAYDWLIP--PDGKQTGNLKNLLCGCGSGVISKTFTYPLDLIKKRLQVGGFEHARSAFGQVRS----YRGLLDLTQQVLQEEGTRGFFKGLSPSLMKAALSTGFMFFWYE 304          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TAAC_ARATH (Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=TAAC PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 67/213 (31.46%), Postives = 104/213 (48.83%), Query Frame = 3
Query:   78 PLERVKILVQT------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R+K+L+QT      +++    IG   +I  I K EG  G+++GN   V RIVPY+A+   AYE Y++  +    D     +  L AG+ AG T+ L TYPLD++R +LA                 E  YR +        +E G+   Y G  PSL  I PY  + F  ++ +K+ +PE +++     L    +A  +     YPLD +
Sbjct:  135 PLDRIKLLMQTHGVRAGQQSAKKAIGFIEAITLIGKEEGIKGYWKGNLPQVIRIVPYSAVQLFAYETYKK--LFRGKDGQLSVLGRLGAGACAGMTSTLITYPLDVLRLRLA----------------VEPGYRTMSQVALNMLREEGVASFYNGLGPSLLSIAPYIAINFCVFDLVKKSLPEKYQQKTQSSLLTAVVAAAIATGTCYPLDTI 329          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
SCMC2_BOVIN1.019e-2432.08Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_XENTR1.019e-2429.72Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_RAT1.331e-2431.60Calcium-binding mitochondrial carrier protein SCaM... [more]
EAAC_ARATH5.058e-2431.46Probable envelope ADP,ATP carrier protein, chlorop... [more]
CMC3_CAEEL1.472e-2327.96Probable calcium-binding mitochondrial carrier F17... [more]
CMC3_CAEBR1.922e-2328.91Probable calcium-binding mitochondrial carrier CBG... [more]
CMC2_CAEEL3.279e-2329.25Putative calcium-binding mitochondrial carrier F55... [more]
ADT2_BOVIN5.592e-2333.03ADP/ATP translocase 2 OS=Bos taurus GN=SLC25A5 PE=... [more]
TPC_MOUSE9.539e-2330.32Mitochondrial thiamine pyrophosphate carrier OS=Mu... [more]
TAAC_ARATH1.627e-2231.46Thylakoid ADP,ATP carrier protein, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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