FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2541_BOVIN (Solute carrier family 25 member 41 OS=Bos taurus GN=SLC25A41 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 56/213 (26.29%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLD--LIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK----RHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R K+ +Q   ++ + + + G ++ + +  G    +RGNG +V +I P  A+ +  +E+ + +    F  V   P     L+AGS A  T+     P+++++T+L  +                  Y+G+ DC RQ  ++ G R LYRG  P++ GI PYA      YE +     +   +      +V L+  +++   GQ  +YPL +V
Sbjct:  110 PLDRAKVYMQVYSSKKNFMNLLGGLRSLIQEGGIRSLWRGNGINVLKIAPEYAIKFSVFEQCKNY----FCGVHESPPFQERLLAGSLAVATSQTLINPMEVLKTRLTLRRTGQ--------------YKGLLDCARQILEQEGTRALYRGYLPNMLGIIPYACTDLAVYEMLNCLWLKSGRDMKDPSGLVSLSSVTLSTTCGQMASYPLTLV 304          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCFC_DICDI (Mitochondrial substrate carrier family protein C OS=Dictyostelium discoideum GN=mcfC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 61/211 (28.91%), Postives = 98/211 (46.45%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQ-TYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVK---LACGSIAGLLGQTFTYPLDVV 698
            PLERVKI+ Q    +   I +  + K   K  G  GF+RGN A++ ++ P +A+ +  YE  ++  + +  D         I+GS AG  +    +PL++VR +L+ +I  +              Y GI DCF++    E  +R  YRG   S+    P++G+    YE +K  V +    +       L C S + + GQ   YP  VV
Sbjct:  206 PLERVKIMCQLNHGK--PISLISAFKACYKDGGIKGFFRGNLANIIKVSPESAVKFGTYEYVKK--LFAENDCELTSAQRFISGSVAGVVSHTTLFPLEVVRLRLSAEIAGT--------------YNGIFDCFKKIAISEKSIRPFYRGLGASITATIPHSGVNMMVYEFLKHKVIKMTGNEFPTAGQLLVCASTSSVCGQLVGYPFHVV 398          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC_PONAB (Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 56/198 (28.28%), Postives = 97/198 (48.99%), Query Frame = 3
Query:  117 AEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR----HVPEDHKK-DIMVKLACGSIAGLLGQTFTYPLDV 695
            A++H  G+  + ++I + EG   F++G+  +    + Y A+ ++++E     +       +R   +  + G  A   A L  +P+D++RT+ A Q                 VY  +       Y+  G +  Y+G AP+L  IFPYAGL+F  Y  +K      +P + KK + +  L CGS AG++ +T TYPLD+
Sbjct:   57 AKYH--GILQASRQILQEEGPTAFWKGHIPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDVLRTRFAAQ-------------GEPKVYNTLCHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDL 239          

HSP 2 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 41/142 (28.87%), Postives = 69/142 (48.59%), Query Frame = 3
Query:  165 KTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP--VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYE 584
            ++EG   FY+G   ++  I PYA L +  Y   +     + P   +    + +L+ GS AG  +   TYPLDL + +L     + ++  F  V      Y+G+ DC +Q  ++ G  G ++G +PSL       G  F++YE
Sbjct:  167 RSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQV----RRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFWYE 304          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT1_GOSHI (ADP,ATP carrier protein 1, mitochondrial OS=Gossypium hirsutum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 67/220 (30.45%), Postives = 103/220 (46.82%), Query Frame = 3
Query:   78 PLERVKILVQT--------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP----VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-IMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q         R +E ++ G+    K+  K EG    +RGN A+V R  P  AL++   + ++R  + +F     G       +L +G  AG +++LF Y LD  RT+LA     + K         E  + G+ D +R+T K  G+ GLYRG   S  GI  Y GL F  Y+ +K  +     +D        G +        +YP+D V
Sbjct:  106 PIERVKLLIQNQDEMIKSGRLSEPYK-GIGDCFKRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKR--LFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKK-------GGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGSMQDSFFASFVLGWLITNGAALASYPIDTV 315          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT2_MAIZE (ADP,ATP carrier protein 2, mitochondrial OS=Zea mays GN=ANT2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 68/220 (30.91%), Postives = 105/220 (47.73%), Query Frame = 3
Query:   78 PLERVKILVQT--------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP----VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-IMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q         R +E ++ G+    K+  K EG    +RGN A+V R  P  AL++   + ++R  + +F     G       +L +G  AG +++ F Y LD  RT+LA     +  K  +G    +  + G+ D +R+T K  G+ GLYRG   S  GI  Y GL F  Y+ +K  V     +D      A G +        +YP+D V
Sbjct:  107 PIERVKLLIQNQDEMIKSGRLSEPYK-GIADCFKRTIKDEGFSSLWRGNTANVIRYFPTQALNFAFKDYFKR--LFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLA-----NDAKAAKG--GGDRQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGLYDSIKPVVLTGSLQDNFFASFALGWLITNGAGLASYPIDTV 316          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT_CHLKE (ADP,ATP carrier protein OS=Chlorella kessleri PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 61/219 (27.85%), Postives = 99/219 (45.21%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEF--------HRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFP---DVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHK-KDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+QT+ +             G+     +++  +G   F+RGN A+V R  P  A ++ A+++  + +   +    D  R  V++L +G  AG  ++L  YPLD  RT+LA  +     + F G+V          DC  +  K  G   LY+G   S+ GI  Y G  F  Y+  K  + +D +  +   K A            +YP D V
Sbjct:   61 PIERVKLLLQTQDSNPMIKSGQVPRYTGIVNCFVRVSSEQGVASFWRGNLANVVRYFPTQAFNF-AFKDTIKGLFPKYSPKTDFWRFFVVNLASGGLAGAGSLLIVYPLDFARTRLAADVGSGKSREFTGLV----------DCLSKVVKRGGPMALYQGFGVSVQGIIVYRGAYFGLYDTAKGVLFKDERTANFFAKWAVAQAVTAGAGVLSYPFDTV 268          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MFRN_DICDI (Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 61/215 (28.37%), Postives = 95/215 (44.19%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHV--------PEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P++ +K  +Q  +    +       K I +  G  G +RG  A  A   P  A+H+  YE  +   I S  D    P+   IAG+ A  T+     P+D+V+ +L  QI D               Y+G+ DC ++ + + G+RG Y G   +L    PY  + F  YE +K+ +        PE+    ++  L  G  AG+L   FT P DVV
Sbjct:   36 PIDTIKTHIQAIKPGAMQTSSLQITKHIIQQHGITGLFRGLTAVAAGAAPSHAVHFSIYELLKFKFIGS--DEDHHPIKVGIAGAIATMTSEAVASPMDVVKQRLQLQITD---------------YKGLTDCTKRIWVKEGIRGFYSGYTTTLVMNVPYNIVYFASYESLKKIIQPWFNNKNPEERSYQLIDHLVAGGGAGMLAAAFTNPFDVV 233          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_ASPOR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus oryzae GN=tpc1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 57/189 (30.16%), Postives = 86/189 (45.50%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDI-MVKLACGSIAGLLGQTFTYPLDVV 698
            G   +I+ I + EG  G ++GN  +    V Y A+ + AY    + +    P     P    +AG+ AGG A   TYPLDL+RT+ A Q               E VY  +    R   +  G +G +RG + ++  I PY GL F  YE ++  +   H         A G +A +L +T  +PLD+V
Sbjct:   65 GTLPTIRSIVREEGITGLWKGNIPAELMYVCYGAIQFAAYRTTTQALSQLDPYRLPPPAESFVAGATAGGLATASTYPLDLLRTRFAAQ-------------GTERVYTSLYASVRDIAQNEGPKGFFRGCSAAVGQIVPYMGLFFATYESLRPVMSGLHDLPFGSGDAAAGVVASVLAKTGVFPLDLV 240          

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 54/177 (30.51%), Postives = 86/177 (48.59%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPE 608
            PL+ ++     +  E     ++ S++ IA+ EG  GF+RG  A+V +IVPY  L +  YE  R  ++    D+  G   D  AG  A   A    +PLDLVR +L  Q    SK   + +      Y+G+ +      +  G+RGLYRG   SL+   P + +  + YE+   ++ E
Sbjct:  142 PLDLLRTRFAAQGTERVYTSLYASVRDIAQNEGPKGFFRGCSAAVGQIVPYMGLFFATYESLRP-VMSGLHDLPFGSG-DAAAGVVASVLAKTGVFPLDLVRKRLQVQGPTRSKYVHRNIPE----YQGVYNTMAMIVRTQGMRGLYRGLTVSLFKAAPASAVTMWTYEKSLHYLRE 312          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT_ORYSJ (ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0718900 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 68/220 (30.91%), Postives = 104/220 (47.27%), Query Frame = 3
Query:   78 PLERVKILVQT--------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVL----DLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-IMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q         R +E ++ G+     +  K EG    +RGN A+V R  P  AL++   + ++R  + +F     G       +L +G  AG +++ F Y LD  RT+LA     +  K  +G    E  + G+ D +R+T K  G+ GLYRG   S  GI  Y GL F  Y+ +K  V     +D      A G +        +YP+D V
Sbjct:  102 PIERVKLLIQNQDEMIKAGRLSEPYK-GIGDCFGRTIKDEGFASLWRGNTANVIRYFPTQALNFAFKDYFKR--LFNFKKDKDGYWKWFGGNLASGGAAGASSLFFVYSLDYARTRLA-----NDAKAAKG--GGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGSLQDNFFASFALGWLITNGAGLASYPIDTV 311          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT2_SOLTU (ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 68/220 (30.91%), Postives = 105/220 (47.73%), Query Frame = 3
Query:   78 PLERVKILVQT--------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP----VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-IMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q         R +E ++ G+     +  K EG    +RGN A+V R  P  AL++   + ++R  + +F     G       +L +G  AG +++LF Y LD  RT+LA     ++KK   G       + G+ D +R+T K  G+ GLYRG   S  GI  Y GL F  Y+ +K  +     +D      A G +        +YP+D V
Sbjct:  105 PIERVKLLIQNQDEMIKAGRLSEPYK-GIGDCFSRTIKDEGFAALWRGNTANVIRYFPTQALNFAFKDYFKR--LFNFKKDRDGYWKWFAGNLASGGGAGASSLLFVYSLDYARTRLAND-AKAAKKGGGG-----RQFDGLVDVYRKTLKSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKMEDSFFASFALGWLITNGAGLASYPIDTV 315          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
S2541_BOVIN5.989e-1726.29Solute carrier family 25 member 41 OS=Bos taurus G... [more]
MCFC_DICDI7.822e-1728.91Mitochondrial substrate carrier family protein C O... [more]
TPC_PONAB1.022e-1628.28Mitochondrial thiamine pyrophosphate carrier OS=Po... [more]
ADT1_GOSHI1.022e-1630.45ADP,ATP carrier protein 1, mitochondrial OS=Gossyp... [more]
ADT2_MAIZE1.742e-1630.91ADP,ATP carrier protein 2, mitochondrial OS=Zea ma... [more]
ADT_CHLKE2.276e-1627.85ADP,ATP carrier protein OS=Chlorella kessleri PE=3... [more]
MFRN_DICDI3.882e-1628.37Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=... [more]
TPC1_ASPOR5.070e-1630.16Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
ADT_ORYSJ5.070e-1630.91ADP,ATP carrier protein, mitochondrial OS=Oryza sa... [more]
ADT2_SOLTU8.648e-1630.91ADP,ATP carrier protein, mitochondrial (Fragment) ... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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