FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT2_ARATH (ADP,ATP carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=ANT2 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 67/220 (30.45%), Postives = 105/220 (47.73%), Query Frame = 3
Query:   78 PLERVKILVQT--------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP----VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR-HVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q         R  E ++ G+     +  + EG    +RGN A+V R  P  AL++   + ++R  + +F     G       +L +G  AG +++LF Y LD  RT+LA    + SK   +G    E  + G+ D +++T K  G+ GLYRG   S  GI  Y GL F  Y+ +K   +  D +       A G +        +YP+D V
Sbjct:  104 PIERVKLLIQNQDEMLKAGRLTEPYK-GIRDCFGRTIRDEGIGSLWRGNTANVIRYFPTQALNFAFKDYFKR--LFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLA----NDSKSAKKG--GGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCAGIIVYRGLYFGLYDSVKPVLLTGDLQDSFFASFALGWLITNGAGLASYPIDTV 314          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_LODEL (Mitochondrial thiamine pyrophosphate carrier 1 OS=Lodderomyces elongisporus GN=TPC1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 58/215 (26.98%), Postives = 96/215 (44.65%), Query Frame = 3
Query:   78 PLERVKILVQT-----RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVS---RGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ +KI +Q      +     ++     +K + K EG +  ++GN  +    V Y A+ +  Y    + +     D S      V  L+AG  AG  + L TYP DL+RT+L    V + KKN   +             FR+     G+ GL+ G  P++  +    GL F+ Y E+ R    ++K    ++  CG +AG   +  T+PLD +
Sbjct:   38 PLDTIKIRLQLQTKSHKHPHTQKVSALNVVKDLLKNEGVIALWKGNVPAEILYVMYGAVQFTTYSALSKSLSQMEKDYSIVMPSSVHSLLAGVGAGIASTLTTYPFDLLRTRL----VANKKKNLLSMTGT----------FRKILHAEGISGLFAGIRPAMISVASTTGLMFWSY-ELAREFSSEYKHVPFIEGICGFVAGATSKGITFPLDTL 237          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: CMC_DICDI (Calcium-binding mitochondrial carrier protein OS=Dictyostelium discoideum GN=mcfO PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 58/178 (32.58%), Postives = 90/178 (50.56%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPED 611
            PLE VKI +Q +       G   S   I K  G  G Y+G GA + R +P++A+++  Y + +   IL+  D   GP+  L+AG+ AG  A     P D+++T+L        K N     + E  Y GIRDCF++  KE G R L++GA   ++   P  G+    YE +++ +  D
Sbjct:  557 PLEIVKIRLQVQST-----GPKVSAITIIKELGLAGLYKGAGACLLRDIPFSAIYFPTYAKMKT--ILANEDGKLGPMDLLLAGAVAGIPAASLVTPADVIKTRLQV------KAN-----AGEQTYTGIRDCFQKILKEEGPRALFKGALARVFRSSPQFGVTLVSYELLQKALLPD 716          

HSP 2 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 64/215 (29.77%), Postives = 101/215 (46.98%), Query Frame = 3
Query:   78 PLERVKILVQTRRA----EFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPV---LDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVP-EDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P++ VK  +Q +RA    +   +  +   KK+ K EG  G Y+G    +  + P  A+     +  R      F D S+G +   L+++AG FAG + V  T PL++V+ +L  Q+  +  K     VSA  +            KE GL GLY+GA   L    P++ + F  Y +MK  +  ED K   M  L  G++AG+   +   P DV+
Sbjct:  458 PIDLVKTRMQNQRAVDPAKRLYVNSWDCFKKVVKFEGVRGLYKGILPQMVGVAPEKAIKLTVNDLLRDL----FGDKSKGEIYFPLEVLAGGFAGMSQVCVTNPLEIVKIRL--QVQSTGPK-----VSAITI-----------IKELGLAGLYKGAGACLLRDIPFSAIYFPTYAKMKTILANEDGKLGPMDLLLAGAVAGIPAASLVTPADVI 650          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_EMENI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans GN=tpc1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 57/159 (35.85%), Postives = 81/159 (50.94%), Query Frame = 3
Query:  138 VFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVL----DLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHV------YRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYE 584
            +F S++ IAKTEG +GF+RG  A+V +IVPY  L +  YE  R  ++ + P++S  P+     D  AG  A   A    +PLDLVR +L            QG   A +V      YRG+ +     ++  GLRGLYRG   SL    P + +  + YE
Sbjct:  164 LFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRP-VMATAPELSPIPLPPGSGDAAAGIVASVLAKTGVFPLDLVRKRL----------QVQGPTRALYVHRNIPEYRGVFNTMGLIFRTQGLRGLYRGLTVSLVKAAPASAVTMWTYE 311          

HSP 2 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 58/194 (29.90%), Postives = 85/194 (43.81%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK---RHVPEDHKKDI---MVKLACGSIAGLLGQTFTYPLDVV 698
            G   +IK I + EG  G ++GN  +    V Y  + +  Y    + +    P     P+   I+G+  GG A   TYPLDL+RT+ A Q    S  N         VY  +    R   K  G  G +RG + ++  I PY GL F  YE ++      PE     +       A G +A +L +T  +PLD+V
Sbjct:   65 GTLSTIKTILREEGLTGLWKGNIPAELLYVCYGGIQFTTYRTTTQLLAQLDPHRLPQPIESFISGALGGGIATAATYPLDLLRTRFAAQ---GSGDN--------RVYESLFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAPELSPIPLPPGSGDAAAGIVASVLAKTGVFPLDLV 247          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_PICGU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia guilliermondii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 61/212 (28.77%), Postives = 104/212 (49.06%), Query Frame = 3
Query:   78 PLERVKILVQ-TRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWII---LSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDI-MVKLACGSIAGLLGQTFTYPLDVV 698
            PL+ VKI +Q + ++     G+  ++ +I K EG   F++GN  +    + Y A  + +Y  + + +     ++    R     LI G+ AG T+++ TYP DL+RT+LA               ++E  +  +    +Q     GL GLY GA P+L  +   +GL F+ Y E+ R V   +K +I  ++  CG  AG   +  T+PLD +
Sbjct:   37 PLDTVKIRLQLSNKSLGAHDGLRQTVVRIFKNEGIRAFWKGNVPAEIMYILYGATQFTSYSMFSKALTELETTYGFNLRPSNHSLIVGTSAGLTSLIVTYPFDLLRTRLA--------------ANSERHFLSMTAVIKQVRASGGLAGLYMGAKPTLLSLGLNSGLMFWTY-EIAREVSAQYKDNIPFIEGFCGFFAGASSKGITFPLDTL 233          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2541_HUMAN (Solute carrier family 25 member 41 OS=Homo sapiens GN=SLC25A41 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 54/213 (25.35%), Postives = 100/213 (46.95%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLD--LIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK----RHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R K+ +Q   ++ +   + G ++ + +  G    +RGNG +V +I P  A+ +  +E+ + +    F  +   P     L+AGS A   +     P+++++T+L  +                  Y+G+ DC RQ  +  G R LYRG  P++ GI PYA      YE ++    +   +      +V L+  +++   GQ  +YPL +V
Sbjct:  112 PLDRAKVYMQVYSSKTNFTNLLGGLQSMVQEGGFRSLWRGNGINVLKIAPEYAIKFSVFEQCKNY----FCGIQGSPPFQERLLAGSLAVAISQTLINPMEVLKTRLTLRRTGQ--------------YKGLLDCARQILQREGTRALYRGYLPNMLGIIPYACTDLAVYEMLQCFWVKSGRDMGDPSGLVSLSSVTLSTTCGQMASYPLTLV 306          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT1_ARATH (ADP,ATP carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=ANT1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 68/220 (30.91%), Postives = 105/220 (47.73%), Query Frame = 3
Query:   78 PLERVKILVQT--------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP----VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR-HVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q         R +E ++ G+     +  K EG    +RGN A+V R  P  AL++   + ++R  + +F     G       +L +G  AG +++LF Y LD  RT+LA     ++KK   G       + G+ D +R+T K  G+ GLYRG   S  GI  Y GL F  Y+ +K   +  D +       A G +        +YP+D V
Sbjct:  100 PIERVKLLIQNQDEMIKAGRLSEPYK-GIGDCFGRTIKDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKR--LFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLAND-AKAAKKGGGG-----RQFDGLVDVYRKTLKTDGIAGLYRGFNISCVGIIVYRGLYFGLYDSVKPVLLTGDLQDSFFASFALGWVITNGAGLASYPIDTV 310          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: TPC1_AJECN (Mitochondrial thiamine pyrophosphate carrier 1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TPC1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 52/188 (27.66%), Postives = 84/188 (44.68%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            G   ++K I + EG  G ++GN  +    + Y  + + +Y       + + P     PV   I+G+ AGG A   TYPLDL+RT+ A Q               + +Y  +R   R   +  G  G +RGA  ++  I PY GL F  YE ++  +              G +A ++ +T  +PLD+V
Sbjct:   65 GTISTLKSIFRDEGITGLWKGNIPAELLYICYGGIQFSSYRAISS-ALRTLPHPLPQPVESFISGAVAGGIATTSTYPLDLLRTRFAAQ-------------GNDRIYASLRVSVRDIARTEGPHGFFRGATAAIAQIVPYMGLFFAGYEALRSPIASLELPFGTGDAGAGVVASVIAKTGVFPLDLV 238          

HSP 2 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  147 SIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEM 590
            S++ IA+TEG  GF+RG  A++A+IVPY  L +  YE  R  I         G   D  AG  A   A    +PLDLVR +L  Q+   +++ +  + +   VY G+    R      G +GLYRG   SL    P + +  + YE +
Sbjct:  164 SVRDIARTEGPHGFFRGATAAIAQIVPYMGLFFAGYEALRSPIASLELPFGTG---DAGAGVVASVIAKTGVFPLDLVRKRL--QVQGPTRRRY--IHTNIPVYEGVYRTIRAILASQGPKGLYRGLTVSLIKAAPASAVTMWTYEHV 304          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCFE_DICDI (Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 58/215 (26.98%), Postives = 94/215 (43.72%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRI-GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDV-SRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHV------PEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            P++ V+  VQ  +    +  G F ++ +I K EG    Y+G        VP  AL+++ YE  ++W+   +        +    AG  A     L   P+D+++ +L  Q       N Q +   +  Y+G     +   +E G+RGLYRG  P+L    P+ G+ F  YE+ K  +       +D    I  +L  G  AG      T PLDV+
Sbjct:   28 PVDTVRARVQIEKVGKSQYKGTFNALNQIIKNEGVSYLYKGFPIVATATVPAHALYFLGYEYSKQWVTDRYGKKWGESTITHFSAGFVADALGSLIWVPMDIIKQRLQVQT------NTQKLNPNQTYYKGSFHAGKIILQEEGIRGLYRGFMPALATYGPFVGIYFSVYEKCKSTISSLLSKEKDQYLPIPYQLGSGFFAGAFAAAVTCPLDVI 236          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: ADT1_SOLTU (ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 65/220 (29.55%), Postives = 102/220 (46.36%), Query Frame = 3
Query:   78 PLERVKILVQT--------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGP----VLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-IMVKLACGSIAGLLGQTFTYPLDVV 698
            P+ERVK+L+Q         R +E ++ G+     +  K EG    +RGN A+V R  P  AL++   + ++R  + +F     G       +L +G  AG +++ F Y LD  RT+LA     S K         E  + G+ D +++T K  G+ GLYRG   S  GI  Y GL F  Y+ +K  +   + +D        G +        +YP+D V
Sbjct:  106 PIERVKLLIQNQDEMLKAGRLSEPYK-GIGECFGRTIKEEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKR--LFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLANDRKASKK-------GGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGNLQDSFFASFGLGWLITNGAGLASYPIDTV 315          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADT2_ARATH8.648e-1630.45ADP,ATP carrier protein 2, mitochondrial OS=Arabid... [more]
TPC1_LODEL1.129e-1526.98Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
CMC_DICDI1.129e-1532.58Calcium-binding mitochondrial carrier protein OS=D... [more]
TPC1_EMENI1.475e-1535.85Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_PICGU1.927e-1528.77Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2541_HUMAN1.927e-1525.35Solute carrier family 25 member 41 OS=Homo sapiens... [more]
ADT1_ARATH1.927e-1530.91ADP,ATP carrier protein 1, mitochondrial OS=Arabid... [more]
TPC1_AJECN2.516e-1527.66Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
MCFE_DICDI4.292e-1526.98Mitochondrial substrate carrier family protein E O... [more]
ADT1_SOLTU4.292e-1529.55ADP,ATP carrier protein, mitochondrial OS=Solanum ... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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