FC930567

Overview
NameFC930567
Unique NameFC930567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_ASHGO (ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            +++MS    +  RK+  + + G D+P PI+ F +  FPE +LK++K +G  +PT IQ QG P+ LSGRDMIG+A TGSG+   +CL
Sbjct:   85 VQKMSTDEVEQFRKENEMKIVGHDVPKPIRTFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 170          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            +R  S +     RK+  + + G DIP PI  F +  FP+ +LK++KA+G  +PT IQ QG P+ LSGRDM+GIA TGSG+   +CL
Sbjct:   81 VRNRSDQEVAQFRKESEMTITGHDIPKPITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCL 166          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            ++ M+++   + R +  I V+G D+P P+K F+D  FP+ IL+ +   G  +PTPIQ QG P+ L GRD+IGIA TGSG+
Sbjct:  136 VQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGK 215          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  482 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            S +  +  RK+  + V G DIP PI  F +  FP+ +L+++K +G  +PTPIQ QG P+ LSGRDMIGIA TGSG+   +CL
Sbjct:  102 SDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCL 183          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            ++ MS       R+Q  I V+G D+P P++ F++  FP+  ++ +   G V+PTPIQ QG P+ L GRDMIGIA TGSG+
Sbjct:  222 VQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGK 301          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  482 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            S++  D  RK+  + V G D+P P++ F +  FP+ +L ++KA+G  +PT IQ QG P+ LSGRD++GIA TGSG+   +CL
Sbjct:  115 SQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCL 196          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            + + S    D  RK+  I V G+++P P++ F +  FP+ ++ ++KA+G  +PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:   96 VSQRSTHEVDAFRKEHEITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGK 175          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_VANPO (ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            ++  S +  +  R++  + + G DIP PI +F +  FP+ +L+++KA+G  +PT IQ QG P+ LSGRDMIG+A TGSG+   +CL
Sbjct:   84 VKARSDQEINEFRREHEMTITGHDIPKPITSFDEAGFPDYVLEEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_ASPOR (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae GN=dbp2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 37/86 (43.02%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            +   S++  D  RK++ + V G++IP P++ F +  FP+ +L ++KA+G  +PT IQ QG P+ LSGRD++GIA TGSG+   +CL
Sbjct:  101 VANRSQRDVDEFRKKFEMSVQGKNIPRPVETFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCL 186          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            + +MS+      RK+  + + G D+P PI++F +  FP  +L ++K +G  +PT IQ QG P+ LSGRDMIG+A TGSG+   +CL
Sbjct:   84 VAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCL 169          
The following BLAST results are available for this feature:
BLAST of FC930567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
DBP2_ASHGO6.239e-1545.35ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii... [more]
DBP2_CANGA1.064e-1446.51ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
RH30_ARATH2.371e-1445.00DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
DBP2_CANAL3.096e-1448.78ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]
RH30_ORYSJ4.044e-1445.00DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]
DBP2_EMENI5.281e-1445.12ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
DBP2_AJECN5.281e-1442.50ATP-dependent RNA helicase DBP2 OS=Ajellomyces cap... [more]
DBP2_VANPO6.897e-1443.02ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma... [more]
DBP2_ASPOR6.897e-1443.02ATP-dependent RNA helicase dbp2 OS=Aspergillus ory... [more]
DBP2_KLULA9.008e-1443.02ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionC34008H09EF PostHarvC1 Citrus clementina cDNA clone C34008H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930567 ID=FC930567; Name=FC930567; organism=Citrus clementina; type=EST; length=744bp
GATTGACACTTAAAAAAATTGTTTTACGAATTGGAAATTAATAAATTTTC
TTTCGCCTCTGTTTTAGGGCTCCCGCAAAATTAGGGTTTACTTCATTTGT
TCGTGAATCAAGCTTTTTCTTGGAGATTAAATGATGGAGGAAGAAGATGA
TTACGTCGAGTATGTTCCAATCGCAAAGCGACGAGCAATGGAAGCTCAAA
AAATACTCCAGCGCAAGGGGCAGGCGTCTACGCTTGAGGACGAGCTTGAG
AAGTCTAAACTTGCTGAAGTCAAACCTAGTCTTCTTGTTAAAGCATCCCA
GCTTAAGCGTGATCAGCCTGAAATTAGTCCCACGGAACAGATTGTGCAAC
AAGAGAAGGAGATGATTGAGAACTTGTCAGATAGGAAGACGCTGATGTCA
GTTCGGGAGTTAGCTAAGGGGATTACTTATACGGATCCTTTGTTGACTGG
ATGGAAACCGCCATTGCCTATTAGAAGAATGTCAAAGAAAGCGTGTGATT
TAATTCGAAAACAGTGGCATATTATTGTTGATGGTGAAGATATTCCTCCA
CCGATTAAGAACTTCAAGGACATGAGGTTTCCTGAGCCAATTTTGAAGAA
GTTGAAAGCCAAAGGGATTGTGCAACCAACCCCAATTCAGGTGCAGGGTC
TTCCTGTTGTTCTATCTGGAAGGGACATGATTGGAATTGCGTTTACGGGA
TCAGGGAGACATTGGTGTTTGTATTGCCATGATCATGATAGCGA
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