FC930567
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 3.039e-78 Identity = 142/180 (78.89%), Postives = 164/180 (91.11%), Query Frame = 2 Query: 170 IAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 +A+RRA+ AQKILQRKG+AS LE+E +K KLAE KPSLLV+A+QLKRD PE+S TEQI+ QEKEM+E+LSD+KTLMSVRELAKGITYT+PLLTGWKPPL IR+MS K DLIRKQWHIIV+G+DIPPPIKNFKDM+FP P+L LK KGIVQPTPIQVQGLPV+L+GRDMIGIAFTGSG+ Sbjct: 17 VAERRAIAAQKILQRKGKASELEEEADKEKLAEAKPSLLVQATQLKRDVPEVSATEQIILQEKEMMEHLSDKKTLMSVRELAKGITYTEPLLTGWKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGK 196
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 3.053e-62 Identity = 122/205 (59.51%), Postives = 150/205 (73.17%), Query Frame = 2 Query: 167 PIAKRRAMEAQKI----LQRKGQASTLEDELEKSKL--------------------AEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 P+AKRRAMEA ++ L + S+ E A KPSLLVKA+QLKR PE++ TEQ++ QEKEMIE+LSDRKTLMSVRELAKGITY+DPL TGWKPPL +RRM + D +R++WHI+VDG+D+PPP ++F+D+R PEP+L+KL+ KGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSG+ Sbjct: 28 PVAKRRAMEADRLRRLRLSKPAPPSSSAAEAASDLPPPPPPPPNQPSAGGGGGGLEASAKPSLLVKATQLKRAAPEVTHTEQLIMQEKEMIEHLSDRKTLMSVRELAKGITYSDPLKTGWKPPLRLRRMPRAKADELRRKWHILVDGDDVPPPARDFRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGK 232
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.468e-56 Identity = 107/193 (55.44%), Postives = 145/193 (75.13%), Query Frame = 2 Query: 167 PIAKRRAMEAQKILQRKGQASTLEDEL----------EKSKLAEV--KPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 P+AKRRAMEA+++ + +T + + EV K SLLVKA++LKR+ PE++P E+++QQE+EMIE+LSDRK LM V E+AKGI+Y++P+ TGW+PPL +RRM + D +R+ WHI+VDG+D+PPP ++F D+R PEPIL+ L+ KGI +PTPIQVQGLPV LSGRDMIGIAFTGSG+ Sbjct: 31 PVAKRRAMEAERLRRATKPPTTNAVAVAAPPPPPRSTSSPAVGEVAVKTSLLVKATKLKREAPEVTPAERLLQQEREMIEHLSDRKALMPVGEIAKGISYSEPITTGWRPPLRLRRMPRSRADALRRSWHILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGK 223
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.124e-47 Identity = 90/118 (76.27%), Postives = 103/118 (87.29%), Query Frame = 2 Query: 356 KEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 K M+E+LSD+K LMSV ELA+GITYT+PL T WKPPL +R+MS K DLIRKQWHI V+GEDIPPPIKNF DM+FP P+L+ LK KGI+ PTPIQVQGLPVVLSGRDMIGIAFTGSG+ Sbjct: 30 KGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 147
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.334e-41 Identity = 85/194 (43.81%), Postives = 134/194 (69.07%), Query Frame = 2 Query: 167 PIAKRRAMEAQKILQRKGQASTLEDELEKSKLA-----------EVKPSLLVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 P+ +RR + QK+LQR+ + +T E++ + + SLL + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI+ PTPIQ+QG+P +LSGRDMIGIAFTGSG+ Sbjct: 38 PLRQRRQLLLQKLLQRRRKGATEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGK 231
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 1.475e-40 Identity = 84/194 (43.30%), Postives = 132/194 (68.04%), Query Frame = 2 Query: 167 PIAKRRAMEAQKILQRKGQASTLEDELEKSKLA-----------EVKPSLLVKASQLKR--DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 P+ +RR + QK+LQR+ + + E++ + + SLL + LK + + S E+ +++E++++E++++ + LMSV+E+AKGITY DP+ T W PP + MS++ + +RK++HI+V+G+ IPPPIK+FK+M+FP IL+ LK KGI PTPIQ+QG+P +LSGRDMIGIAFTGSG+ Sbjct: 38 PLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGK 231
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_DROME (ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster GN=abs PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.094e-35 Identity = 77/166 (46.39%), Postives = 110/166 (66.27%), Query Frame = 2 Query: 212 RKGQASTLEDELEKSKLAEVKPSLLVKASQLKRDQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 RK S L+ E K+AE K ++S E+ +++E++++E+++ +K LM V ELAKGI Y P+ T WKPP IR MS++ + +R + I+V+GE PPI++F++M+FP+ IL L AKGI PTPIQVQGLP VL+GRD+IGIAFTGSG+ Sbjct: 77 RKYNISLLDQHTELKKIAEAK---------------KLSAVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGK 227
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.755e-31 Identity = 63/133 (47.37%), Postives = 94/133 (70.68%), Query Frame = 2 Query: 311 DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 ++ +I +++ +E +++++L K L+SV++ AK + YTD + T W+ P I +K +R Q +II DGEDIPPPI FK+M+ P+P++ L KGI +P+PIQVQGLPV+LSGRDMIGIA+TGSG+ Sbjct: 140 EENKIKEEKRLDMEESDILKSLKTFKPLVSVKDRAKDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGK 272
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15 Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = 2 Query: 479 MSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 M+++ + R++ I V+G D+P P++ F+D+ FPE +L+++ G V+PTPIQ QG P+ L GRD+IGIA TGSG+ Sbjct: 65 MTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGK 141
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15 Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 2 Query: 470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 + M+ + RK I V+G+DIP P+K+F+D+ FP+ +L+++K G +PTPIQ QG P+ + GRD+IGIA TGSG+ Sbjct: 70 VAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGK 149 The following BLAST results are available for this feature:
BLAST of FC930567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930567 ID=FC930567; Name=FC930567; organism=Citrus clementina; type=EST; length=744bpback to top |