FC930567

Overview
NameFC930567
Unique NameFC930567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  506 RKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            RK+  +  DG DIP PI +F +  FP+ +LK++K +G  +PT IQ QG P+ LSGRDM+GIA TGSG+   +CL
Sbjct:   88 RKEHDMKCDGTDIPKPITSFDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCL 161          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            +R  S       RK+  + + G DIP PI  F +  FP+ +L ++KA+G  +PT IQ QG P+ LSGRDM+GIA TGSG+   +CL
Sbjct:   84 VRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCL 169          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR--HWCL 721
            +R  S       RK+  + + G DIP PI  F +  FP+ +L ++KA+G  +PT IQ QG P+ LSGRDM+GIA TGSG+   +CL
Sbjct:   84 VRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCL 169          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  482 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            S++  +  RK+  + V G ++P P++NF +  FP+ +L ++KA+G  +PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:   94 SEREVEEFRKKHEMTVQGRNVPRPVENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGK 169          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 33/80 (41.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            +   S +  +  RK+  + V G+++P P++ F +  FP+ ++ ++KA+G  +PTPIQ QG P+ LSGRD++GIA TGSG+
Sbjct:   96 VTNRSAQDVEAFRKEHEMTVYGKNVPRPVETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGK 175          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_ASPFU (ATP-dependent RNA helicase dbp2 OS=Aspergillus fumigatus GN=dbp2 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  482 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            S++  +  RK+  + V G ++P P++NF +  FP+ +L ++KA+G  +PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:   96 SEREVEEFRKKHEMTVQGRNVPRPVENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGK 171          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_ASPNC (ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  452 WKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            +K    +   S++  D  RK+  + V G ++P P++ F +  FP+ +L ++KA+G  +PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:  102 YKEHADVAERSQRDVDEFRKKHEMAVQGRNVPRPVETFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGK 187          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_SCLS1 (ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  506 RKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            R Q +I V G +IP P++ F +  FP  ++ ++KA+G   PTPIQ QG P+ LSGRD++GIA TGSG+
Sbjct:  132 RAQHNIAVQGPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGK 199          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            +   S+   D  R++  + V G D+P P++ F +  FP  ++ ++KA+G   PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:   96 VTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGK 175          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_BOTFB (ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp2 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  506 RKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            R Q +I V G +IP P++ F +  FP  ++ ++KA+G   PTPIQ QG P+ LSGRD++GIA TGSG+
Sbjct:   85 RAQHNIAVQGPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGK 152          
The following BLAST results are available for this feature:
BLAST of FC930567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
DBP2_DEBHA9.008e-1451.35ATP-dependent RNA helicase DBP2 OS=Debaryomyces ha... [more]
DBP2_YEAST1.177e-1345.35ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS71.177e-1345.35ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_NEOFI1.537e-1344.74ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]
DBP2_COCIM1.537e-1341.25ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
DBP2_ASPFU1.537e-1344.74ATP-dependent RNA helicase dbp2 OS=Aspergillus fum... [more]
DBP2_ASPNC2.007e-1340.70ATP-dependent RNA helicase dbp2 OS=Aspergillus nig... [more]
DBP2_SCLS19.960e-1350.00ATP-dependent RNA helicase dbp2 OS=Sclerotinia scl... [more]
DBP2_MAGGR9.960e-1341.25ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]
DBP2_BOTFB9.960e-1350.00ATP-dependent RNA helicase dbp2 OS=Botryotinia fuc... [more]

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Properties
Property NameValue
Genbank descriptionC34008H09EF PostHarvC1 Citrus clementina cDNA clone C34008H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930567 ID=FC930567; Name=FC930567; organism=Citrus clementina; type=EST; length=744bp
GATTGACACTTAAAAAAATTGTTTTACGAATTGGAAATTAATAAATTTTC
TTTCGCCTCTGTTTTAGGGCTCCCGCAAAATTAGGGTTTACTTCATTTGT
TCGTGAATCAAGCTTTTTCTTGGAGATTAAATGATGGAGGAAGAAGATGA
TTACGTCGAGTATGTTCCAATCGCAAAGCGACGAGCAATGGAAGCTCAAA
AAATACTCCAGCGCAAGGGGCAGGCGTCTACGCTTGAGGACGAGCTTGAG
AAGTCTAAACTTGCTGAAGTCAAACCTAGTCTTCTTGTTAAAGCATCCCA
GCTTAAGCGTGATCAGCCTGAAATTAGTCCCACGGAACAGATTGTGCAAC
AAGAGAAGGAGATGATTGAGAACTTGTCAGATAGGAAGACGCTGATGTCA
GTTCGGGAGTTAGCTAAGGGGATTACTTATACGGATCCTTTGTTGACTGG
ATGGAAACCGCCATTGCCTATTAGAAGAATGTCAAAGAAAGCGTGTGATT
TAATTCGAAAACAGTGGCATATTATTGTTGATGGTGAAGATATTCCTCCA
CCGATTAAGAACTTCAAGGACATGAGGTTTCCTGAGCCAATTTTGAAGAA
GTTGAAAGCCAAAGGGATTGTGCAACCAACCCCAATTCAGGTGCAGGGTC
TTCCTGTTGTTCTATCTGGAAGGGACATGATTGGAATTGCGTTTACGGGA
TCAGGGAGACATTGGTGTTTGTATTGCCATGATCATGATAGCGA
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