FC930567
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11 Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 2 Query: 482 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 S+ D R+ + V G ++P P++ F + FP ++ ++KA+G PT IQ QG P+ LSGRD++GIA TGSG+ Sbjct: 111 SQAEVDKFRRDHAMTVAGNNVPSPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGK 186
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11 Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 2 Query: 470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 + S D R I V G ++P P++ F + FP ++ ++KA+G PT IQ QG P+ LSGRD++GIA TGSG+ Sbjct: 103 VANRSPAEVDKFRADHSIAVFGNNVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGK 182
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11 Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 2 Query: 470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 + + +++ + R + + V G ++PPPI F FP ++K++ G PTPIQ Q P+ L GRD+IG+A TGSG+ Sbjct: 355 VSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGK 434
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11 Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2 Query: 470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 I RM++ A + RK+ + V G+D+P PI+ + IL LK +P PIQ Q LP+++SGRD IG+A TGSG+ Sbjct: 367 ISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGK 446
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11 Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 2 Query: 497 DLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 + R++ + + G ++P P++ F + FP ++ ++KA+G PT IQ QG P+ LSGRD++GIA TGSG+ Sbjct: 114 EAFRRKHQMTIAGSNVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGK 184
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11 Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 2 Query: 470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 I RM+++ + RK+ + V G+D+P PIK + IL +K +P PIQ Q LP+++SGRD IG+A TGSG+ Sbjct: 500 ISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGK 579
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11 Identity = 29/81 (35.80%), Postives = 54/81 (66.67%), Query Frame = 2 Query: 467 PIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 P++ M+K+ + ++ ++I G P PI+ +++ P IL+ ++ G +P+PIQ+Q +P+ L+GRD++GIA TGSG+ Sbjct: 383 PLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGK 463
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_TRYBB (Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei GN=HEL64 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11 Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 2 Query: 476 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 ++S++ R++ I + G+D PPP+ +F + P +LKKL A+ PTP+Q Q PV+LSGRD++G+A TGSG+ Sbjct: 73 QLSEEEATKWREEHVITIFGDDCPPPMSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGK 152
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11 Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 2 Query: 470 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 + R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ QG P+ LSGRDM+GIA TGSG+ Sbjct: 62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGK 142
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11 Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 2 Query: 470 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709 + R++ D +R++ I V G D+ P P+ F FP+ ++ L + +PTPIQ QG P+ LSGRDM+GIA TGSG+ Sbjct: 62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGK 142 The following BLAST results are available for this feature:
BLAST of FC930567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930567 ID=FC930567; Name=FC930567; organism=Citrus clementina; type=EST; length=744bpback to top |