FC930567

Overview
NameFC930567
Unique NameFC930567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_CHAGB (ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum GN=DBP2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  482 SKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            S+   D  R+   + V G ++P P++ F +  FP  ++ ++KA+G   PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:  111 SQAEVDKFRRDHAMTVAGNNVPSPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGK 186          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_NEUCR (ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa GN=dbp-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            +   S    D  R    I V G ++P P++ F +  FP  ++ ++KA+G   PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:  103 VANRSPAEVDKFRADHSIAVFGNNVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGK 182          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            + + +++  +  R  + + V G ++PPPI  F    FP  ++K++   G   PTPIQ Q  P+ L GRD+IG+A TGSG+
Sbjct:  355 VSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGK 434          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            I RM++ A +  RK+  + V G+D+P PI+ +        IL  LK     +P PIQ Q LP+++SGRD IG+A TGSG+
Sbjct:  367 ISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGK 446          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  497 DLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            +  R++  + + G ++P P++ F +  FP  ++ ++KA+G   PT IQ QG P+ LSGRD++GIA TGSG+
Sbjct:  114 EAFRRKHQMTIAGSNVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGK 184          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            I RM+++  +  RK+  + V G+D+P PIK +        IL  +K     +P PIQ Q LP+++SGRD IG+A TGSG+
Sbjct:  500 ISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGK 579          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 29/81 (35.80%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  467 PIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            P++ M+K+   + ++ ++I   G   P PI+ +++   P  IL+ ++  G  +P+PIQ+Q +P+ L+GRD++GIA TGSG+
Sbjct:  383 PLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGK 463          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_TRYBB (Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei GN=HEL64 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 33/80 (41.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  476 RMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMR--FPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            ++S++     R++  I + G+D PPP+ +F  +    P  +LKKL A+    PTP+Q Q  PV+LSGRD++G+A TGSG+
Sbjct:   73 QLSEEEATKWREEHVITIFGDDCPPPMSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGK 152          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            + R++    D +R++  I V G D+ P P+  F    FP+ ++  L  +   +PTPIQ QG P+ LSGRDM+GIA TGSG+
Sbjct:   62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGK 142          
BLAST of FC930567 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  470 IRRMSKKACDLIRKQWHIIVDGEDI-PPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGR 709
            + R++    D +R++  I V G D+ P P+  F    FP+ ++  L  +   +PTPIQ QG P+ LSGRDM+GIA TGSG+
Sbjct:   62 VARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGK 142          
The following BLAST results are available for this feature:
BLAST of FC930567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
DBP2_CHAGB1.878e-1142.11ATP-dependent RNA helicase DBP2 OS=Chaetomium glob... [more]
DBP2_NEUCR2.453e-1141.25ATP-dependent RNA helicase dbp-2 OS=Neurospora cra... [more]
DDX17_DICDI3.204e-1137.50Probable ATP-dependent RNA helicase ddx17 OS=Dicty... [more]
RH45_ARATH4.185e-1142.50DEAD-box ATP-dependent RNA helicase 45 OS=Arabidop... [more]
DBP2_GIBZE4.185e-1140.85ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
RH42_ARATH5.465e-1141.25DEAD-box ATP-dependent RNA helicase 42 OS=Arabidop... [more]
DDX23_DICDI5.465e-1135.80ATP-dependent RNA helicase ddx23 OS=Dictyostelium ... [more]
DDX17_TRYBB7.138e-1141.25Putative DEAD-box RNA helicase HEL64 OS=Trypanosom... [more]
DDX17_MOUSE7.138e-1141.98Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]
DDX17_HUMAN7.138e-1141.98Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC34008H09EF PostHarvC1 Citrus clementina cDNA clone C34008H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930567 ID=FC930567; Name=FC930567; organism=Citrus clementina; type=EST; length=744bp
GATTGACACTTAAAAAAATTGTTTTACGAATTGGAAATTAATAAATTTTC
TTTCGCCTCTGTTTTAGGGCTCCCGCAAAATTAGGGTTTACTTCATTTGT
TCGTGAATCAAGCTTTTTCTTGGAGATTAAATGATGGAGGAAGAAGATGA
TTACGTCGAGTATGTTCCAATCGCAAAGCGACGAGCAATGGAAGCTCAAA
AAATACTCCAGCGCAAGGGGCAGGCGTCTACGCTTGAGGACGAGCTTGAG
AAGTCTAAACTTGCTGAAGTCAAACCTAGTCTTCTTGTTAAAGCATCCCA
GCTTAAGCGTGATCAGCCTGAAATTAGTCCCACGGAACAGATTGTGCAAC
AAGAGAAGGAGATGATTGAGAACTTGTCAGATAGGAAGACGCTGATGTCA
GTTCGGGAGTTAGCTAAGGGGATTACTTATACGGATCCTTTGTTGACTGG
ATGGAAACCGCCATTGCCTATTAGAAGAATGTCAAAGAAAGCGTGTGATT
TAATTCGAAAACAGTGGCATATTATTGTTGATGGTGAAGATATTCCTCCA
CCGATTAAGAACTTCAAGGACATGAGGTTTCCTGAGCCAATTTTGAAGAA
GTTGAAAGCCAAAGGGATTGTGCAACCAACCCCAATTCAGGTGCAGGGTC
TTCCTGTTGTTCTATCTGGAAGGGACATGATTGGAATTGCGTTTACGGGA
TCAGGGAGACATTGGTGTTTGTATTGCCATGATCATGATAGCGA
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