FC930830
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_BOVIN (Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15 Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343 LTDLRS LVNN FA++AV ++K+ S L I+++V + + + + E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +P+RELLE+ Sbjct: 1733 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1861
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_MOUSE (Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14 Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343 LTDLRS LVNN FA++AV ++K+ S L I+++V + + + + E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +P+RELLE+ Sbjct: 1726 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEM 1854
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_CRIGR (Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14 Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343 LTDLRS LVNN FA++AV ++K+ S L I+++V + + + + E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +P+RELLE+ Sbjct: 1727 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1855
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_CHICK (Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14 Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343 LTDLRS LVNN FA++AV ++K+ S L I+++V + + + + E +E PK +GD+ ES GAI +DSG +L VW++ + P++ KFS N+ +P+RELLE+ Sbjct: 1731 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1859
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12 Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT-PSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCN 349 LTDLRS VNN +A+ AV K ++ S+ L ++ Y+ T PS E G PKVLGD++ES GAI LDS + VW+ M L+P+ ++ +P++ L E C+ Sbjct: 1198 LTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIG--LPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1312
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12 Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYM----ITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 523 LTDLRS VNN +A+ AV K ++ S+ L ++ Y++ PS E G PKVLGD++ES GAI LDS + VW+ M L+P+ ++ +P++ L E C+ + + G ++ VK + SA + + A ++AS+ + L A Sbjct: 1227 LTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIG--LPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDG--VSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDLIA 1400
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCR1_CAEEL (Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD---------------YMITPSSTREVKEGPR----CPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF--SNLQLNPIRELLE 340 LTDLRS LVNN FA++AV F K I L I +V YM+T + E+ EG PK +GD+ ES GAI LDSG NL+T W+++ + ++ +N +PIREL+E Sbjct: 1644 LTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVT--TEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELME 1775 The following BLAST results are available for this feature:
BLAST of FC930830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930830 ID=FC930830; Name=FC930830; organism=Citrus clementina; type=EST; length=717bpback to top |