FC930830

Overview
NameFC930830
Unique NameFC930830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15223 contig Ccv1_Contig15223:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_BOVIN (Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343
            LTDLRS LVNN  FA++AV   ++K+    S  L   I+++V + +  +  +             E +E    PK +GD+ ES  GAI +DSG +L TVW++    + P++ KFS N+  +P+RELLE+
Sbjct: 1733 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1861          
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_MOUSE (Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343
            LTDLRS LVNN  FA++AV   ++K+    S  L   I+++V + +  +  +             E +E    PK +GD+ ES  GAI +DSG +L  VW++    + P++ KFS N+  +P+RELLE+
Sbjct: 1726 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEM 1854          
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_CRIGR (Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343
            LTDLRS LVNN  FA++AV   ++K+    S  L   I+++V + +  +  +             E +E    PK +GD+ ES  GAI +DSG +L  VW++    + P++ KFS N+  +P+RELLE+
Sbjct: 1727 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1855          
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_CHICK (Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 47/129 (36.43%), Postives = 73/129 (56.59%), Query Frame = 2
Query:    2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343
            LTDLRS LVNN  FA++AV   ++K+    S  L   I+++V + +  +  +             E +E    PK +GD+ ES  GAI +DSG +L  VW++    + P++ KFS N+  +P+RELLE+
Sbjct: 1731 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1859          
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 2
Query:    2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMIT-PSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCN 349
            LTDLRS  VNN  +A+ AV     K ++  S+ L   ++ Y+    T PS   E   G   PKVLGD++ES  GAI LDS  +   VW+ M   L+P+     ++ +P++ L E C+
Sbjct: 1198 LTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLGQSFTGPSYGWEAGIG--LPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCD 1312          
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 53/178 (29.78%), Postives = 85/178 (47.75%), Query Frame = 2
Query:    2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYM----ITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLKA 523
            LTDLRS  VNN  +A+ AV     K ++  S+ L   ++ Y++        PS   E   G   PKVLGD++ES  GAI LDS  +   VW+ M   L+P+     ++ +P++ L E C+     + +      G  ++     VK  +   SA  +   +  A ++AS+ +   L A
Sbjct: 1227 LTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIG--LPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDG--VSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDLIA 1400          
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCR1_CAEEL (Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 2
Query:    2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVD---------------YMITPSSTREVKEGPR----CPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKF--SNLQLNPIRELLE 340
            LTDLRS LVNN  FA++AV   F K  I     L   I  +V                YM+T  +  E+ EG       PK +GD+ ES  GAI LDSG NL+T W+++   +   ++   +N   +PIREL+E
Sbjct: 1644 LTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVT--TEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELME 1775          
The following BLAST results are available for this feature:
BLAST of FC930830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DICER_BOVIN5.816e-1537.21Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=... [more]
DICER_MOUSE1.692e-1436.43Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 P... [more]
DICER_CRIGR2.210e-1436.43Endoribonuclease Dicer OS=Cricetulus griseus GN=DI... [more]
DICER_CHICK3.770e-1436.43Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 ... [more]
DCL2B_ORYSJ1.213e-1237.61Endoribonuclease Dicer homolog 2b OS=Oryza sativa ... [more]
DCL2A_ORYSJ2.069e-1229.78Endoribonuclease Dicer homolog 2a OS=Oryza sativa ... [more]
DCR1_CAEEL1.027e-1137.31Endoribonuclease dcr-1 OS=Caenorhabditis elegans G... [more]

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Properties
Property NameValue
Genbank descriptionC34109E04EF PostHarvP1 Citrus clementina cDNA clone C34109E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930830 ID=FC930830; Name=FC930830; organism=Citrus clementina; type=EST; length=717bp
GTTGACAGATTTGAGGTCAATGTTAGTGAATAATCAAGCCTTTGCCAATG
TTGCAGTTGATCAATCCTTCTACAAATTTCTTATCTTTGATTCCAATGTC
CTATCTGAGACTATAAACAATTATGTGGACTATATGATAACACCTTCATC
AACAAGGGAAGTGAAAGAAGGGCCAAGATGTCCAAAGGTTCTTGGTGACT
TGGTAGAGTCTTCTTTGGGAGCCATCCTGCTTGATTCGGGGTTTAATTTG
AATACTGTGTGGAAAATAATGTTATCCTTTTTGGATCCAATCTTGAAATT
TTCAAACTTGCAGCTTAATCCAATTAGGGAGCTACTGGAACTTTGCAACT
CTTATGACTTGGATTTGCAGTTTCCTAGCTTAAAGAAGGGTGGAAAATTT
TTAGCTGAAGCGAAAGTAGCTGTGAAAGATAAAGATGTTTTTATATCTGC
TTGTGCAACAAACCTGAGCAGAAAAGAAGCTATTAGGATTGCTTCGCAAC
AATTATTCTCGAAGTTGAAGGCTGCAGGCTATGTGCCGAAGACTAAATCA
CTGGAGAGTATTTTGAAGTCCAGCCCCAAGTCGGAAGCCAGACTGATTGG
ATATGATGAAACACCTATAAATGTAGTTGCTGCAGATGACAATGTGTTTG
AAAAGTTGAAGATCAGTGAACCTCAGGCGGTAAATTATACTCTACATGTA
TTCTGATAGTGTGGTGG
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