FC931127

Overview
NameFC931127
Unique NameFC931127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:31..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAAN (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain N315) GN=clpP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAAM (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAAE (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Newman) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAAC (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain COL) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAAB (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAA9 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH9) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAA8 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain NCTC 8325) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAA3 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAA2 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain JH1) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
[Close]
BLAST of FC931127 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:  325 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 573
            D+ S L K+RI+ LG     +V   I+++ L+LQ +D+EK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93
The following BLAST results are available for this feature:
BLAST of FC931127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_STAAN3.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAM3.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAE3.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAC3.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAB3.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA93.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA83.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA33.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA23.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAA13.978e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34101G05EF PostHarvP1 Citrus clementina cDNA clone C34101G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931127 ID=FC931127; Name=FC931127; organism=Citrus clementina; type=EST; length=624bp
GGACAGCCTTTTCACTCTTGCCCTCCACAACTCCGCTACCAAATGGAAGT
AGCCACCGTATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTTAGCAA
CACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACCTATCC
ACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGACTTCTC
CGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTGCAAGT
CCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTAGTGGA
ACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTACAAGAA
TCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGAGCTGA
TTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGCCCATT
TACTTATACATAAACTCTACGGGAACAACCAAGGGTGGCGAGAAGTTGGG
TTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGTCAAGC
CGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAGCGCTT
CTCTTGGGTGCCGGTGCCAAAGGA
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