FC931188

Overview
NameFC931188
Unique NameFC931188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19
Identity = 63/216 (29.17%), Postives = 89/216 (41.20%), Query Frame = 1
Query:   79 FLVSSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726
            F     + S  +RLF RQ+ IH +LGGG                     +ADV+LWR K ++  +L+   A WV+FE   +                           NR    +P L L ++   EV   +   VN  L   QD+A   N + F    + LW+ + VG   +FLT+ Y   V   T+P LYERYED +D +      K    Y K
Sbjct:   32 FEQEDSVSSRFNRLFDRQKPIHHVLGGG--------------------KSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKK 227          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 61/220 (27.73%), Postives = 92/220 (41.82%), Query Frame = 1
Query:  100 GSSSD-----------RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726
            GSSSD           +LF RQR+IH I GGG V                    AD++LWR   +   +++     W + E   Y                           N   P +PE+ L E    ++A     R N  L+   D+A G++  LFF   + L+++S +G   +F+ L +   V + TLP +YE YED +D       RK+++LY K
Sbjct:    6 GSSSDSEDERTIHKTTKLFTRQRSIHSIFGGGKV--------------------ADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKK 205          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15
Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = 1
Query:  115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHID 678
            R+F R+R IH +LGGG                      ADV+LWR K VT+G+L      W++F   G+                           N+    + ++++ E+ + + A+ +   +N   +  + +AL ++ + F    + LWL+S +G    FL+L Y   V++ T+P LYE+YED ID
Sbjct:   53 RMFGRERPIHMVLGGG--------------------KPADVLLWRDKKVTLGLLSAVTVIWLLF---GFGGRRLLTSLCRGSILFLLLSFLWSNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 217          
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 42/151 (27.81%), Postives = 65/151 (43.05%), Query Frame = 1
Query:  232 DVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKY 684
            D+ LWRRK +    LLV+ + W++    G+T                          ++  P L  L +SEE V E     R  + + +     +       +F R  L  W++S +G L DF T  +  LV+ LT+P L+E Y D I K+
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKH 168          
The following BLAST results are available for this feature:
BLAST of FC931188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLH_ARATH1.381e-1929.17Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH9.896e-1827.73Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.210e-1527.13Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLM_ARATH1.808e-1127.81Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34102D09EF PostHarvP1 Citrus clementina cDNA clone C34102D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931188 ID=FC931188; Name=FC931188; organism=Citrus clementina; type=EST; length=728bp
ACTTTTCTCTTTTCTGAGAGATCATCAAAACTACTTGTTACACGGGTTTT
AGAGATCTGGTCTGGATTCAAGATTCTGTTTTTAGTATCTTCTAAAATGG
GTTCATCTTCCGATCGATTGTTTAAAAGACAAAGAACTATTCATGAAATC
CTCGGAGGAGGTCTTGTTGATGGATTGAGTGTTTGGTTCAGGAGTTGATG
TTGATCTTTGTTCAAACTTATAACAGCTGCAGATGTGATTCTTTGGAGGC
GAAAAAATGTAACTGTGGGAATATTGTTGGTAACATTAGCTGCTTGGGTG
GTGTTTGAGAGATCTGGTTACACTTTGTTGTCGCTTGTCTCTAGTGTTCT
ACTACTCCTCATTGCCATTTTGTTTATTTGGGCCAAAGCTGCTGCAATTC
TTAATCGGCCTGCACCACCCCTGCCAGAGTTGCATCTATCAGAAGAAATG
GTAAATGAAGTTGCAGCTTTGATTCGCACTCGTGTAAATGATTTCCTCTC
AGTTTCTCAGGACATGGCCCTGGGCAAGAACTCGAGATTGTTCTTCAGAG
TAGCTCTATACTTGTGGCTGATCTCCTTTGTTGGTGGCTTGACAGATTTT
CTTACATTAGGCTACACCAGCCTTGTTATTGTTCTGACACTTCCAGCCTT
ATATGAGAGATACGAAGATCATATTGATAAATATGNCATATTGGGCTACC
GGAAACTTCGACAGCTGTATGTGAAAAT
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