FC931188
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19 Identity = 63/216 (29.17%), Postives = 89/216 (41.20%), Query Frame = 1 Query: 79 FLVSSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726 F + S +RLF RQ+ IH +LGGG +ADV+LWR K ++ +L+ A WV+FE + NR +P L L ++ EV + VN L QD+A N + F + LW+ + VG +FLT+ Y V T+P LYERYED +D + K Y K Sbjct: 32 FEQEDSVSSRFNRLFDRQKPIHHVLGGG--------------------KSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKK 227
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18 Identity = 61/220 (27.73%), Postives = 92/220 (41.82%), Query Frame = 1 Query: 100 GSSSD-----------RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726 GSSSD +LF RQR+IH I GGG V AD++LWR + +++ W + E Y N P +PE+ L E ++A R N L+ D+A G++ LFF + L+++S +G +F+ L + V + TLP +YE YED +D RK+++LY K Sbjct: 6 GSSSDSEDERTIHKTTKLFTRQRSIHSIFGGGKV--------------------ADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKK 205
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.210e-15 Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = 1 Query: 115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHID 678 R+F R+R IH +LGGG ADV+LWR K VT+G+L W++F G+ N+ + ++++ E+ + + A+ + +N + + +AL ++ + F + LWL+S +G FL+L Y V++ T+P LYE+YED ID Sbjct: 53 RMFGRERPIHMVLGGG--------------------KPADVLLWRDKKVTLGLLSAVTVIWLLF---GFGGRRLLTSLCRGSILFLLLSFLWSNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 217
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 42/151 (27.81%), Postives = 65/151 (43.05%), Query Frame = 1 Query: 232 DVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKY 684 D+ LWRRK + LLV+ + W++ G+T ++ P L L +SEE V E R + + + + +F R L W++S +G L DF T + LV+ LT+P L+E Y D I K+ Sbjct: 18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQIQKH 168 The following BLAST results are available for this feature:
BLAST of FC931188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931188 ID=FC931188; Name=FC931188; organism=Citrus clementina; type=EST; length=728bpback to top |