FC931188
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.419e-40 Identity = 90/210 (42.86%), Postives = 123/210 (58.57%), Query Frame = 1 Query: 97 MGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726 M SSSD+LF R RTIHEILGGG+V ADV+LWR+KNV+VGI+ VT+A+W+VFE YT NRP+PPLPE +SE M E + +R VN L VS D+A+ ++S L+ +VA+ L+L+S +G L DF TL +TS+++V+T+PA YERYED+I K R+LY++ Sbjct: 1 MSSSSDKLFNRDRTIHEILGGGIV--------------------ADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNKTRELYLR 190
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29 Identity = 72/208 (34.62%), Postives = 109/208 (52.40%), Query Frame = 1 Query: 100 GSSSD-RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720 GSSSD RL RQ T+H+ +GGG AAD++LWRR+++++G+++++ AW++FE SG NR LPEL LSEEMVN AA R ++N L ++ D+ +G + RLFF+V + LWL+S +G TL Y ++ +T+PALY +Y+ +DK +R+L Y Sbjct: 18 GSSSDYRLLGRQITVHQFMGGG--------------------KAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHY 205
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25 Identity = 63/211 (29.86%), Postives = 106/211 (50.24%), Query Frame = 1 Query: 88 SSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720 SS S RLF R++ +H++LGGG AD+ LWR K V+ G+L A+WV+FE Y ++ P +PE+H+ E+ + ++ + +R +N L++ +++A GK+ + F V LW++S +G +FLTL YT+ V++ T+P LYE+YED +D Y R++++ Y Sbjct: 42 SSSFKSKIYRLFGREKPVHKVLGGG--------------------KPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQY 232
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23 Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = 1 Query: 223 TAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726 + AD+I+W+ + +L T W +FE+ GY+ NRP P LP L ++EE V VA IR +N L+V++++ +G+N++ FRV++ LW +SFVG +FLT+ Y +V+ L +P LYERY+D ID+ L +R ++ Y K Sbjct: 13 SVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRK 180
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23 Identity = 62/211 (29.38%), Postives = 103/211 (48.82%), Query Frame = 1 Query: 88 SSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720 SS M S RLF R++ +H++LGGG AD+ +W+ K ++ G+L AAWVVFE Y N+ P +PE+H+ EE + ++A+ +R +N S +++A G++ + F LW++S +GG +FLTL Y +LV++ T+P Y++YED +D +L++ Y Sbjct: 63 SSSMKSKVYRLFGREQPVHKVLGGG--------------------KPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQY 253
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.586e-23 Identity = 63/203 (31.03%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYV 723 R+F R++ +H++LGGG ADV LWR K ++ +L V A WV+FE Y N+ +P +PE+H+ EE VA+ +R +N + + +ALG++ + F V + LW+IS VG +FLTL Y VI+ T+P LYE++ED +D ++L++ YV Sbjct: 51 RMFGREKPVHKVLGGG--------------------KPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYV 233
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23 Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 1 Query: 115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYV 723 RLF R++ +H++LGGGL ADV LWR K ++ +L V A WV+FE Y N+ P +PE+H+ EE + + +R +N + + +ALG++ + F V LW+IS VG +FLTL Y V++ T+P LYE++ED +D ++L++ Y+ Sbjct: 51 RLFGREKPVHKVLGGGL--------------------PADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYM 233
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22 Identity = 59/213 (27.70%), Postives = 106/213 (49.77%), Query Frame = 1 Query: 88 SSKMGSSSDRLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLYVK 726 S+ + + RLF R++ +H++ GGG AD+ LWR K V+ G+L +W++FE Y ++ +PE+H+ E++V ++A+ +R +N +V +D+A G++ + F V LW++S VG +FLTL Y + V++ T+P LYE+YED +D + R++++ YV+ Sbjct: 38 SASLKTKIYRLFGREQPLHKLFGGG--------------------KPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVE 230
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22 Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 1 Query: 223 TAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDK 681 + AD++LWR + V +L+ + W +FER+GY NRP PP+P + + EE N+ A +R +N LS++ D+ + +N +V+L LW IS+VG L + LTL Y +++ L+ P +YE+Y+DHID+ Sbjct: 21 SVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDE 173
BLAST of FC931188 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.071e-22 Identity = 56/202 (27.72%), Postives = 98/202 (48.51%), Query Frame = 1 Query: 115 RLFKRQRTIHEILGGGLVDGLSVWFRS*C*SLFKLITAADVILWRRKNVTVGILLVTLAAWVVFERSGYTXXXXXXXXXXXXXXXXXXXXXXXXXXNRPAPPLPELHLSEEMVNEVAALIRTRVNDFLSVSQDMALGKNSRLFFRVALYLWLISFVGGLTDFLTLGYTSLVIVLTLPALYERYEDHIDKYXILGYRKLRQLY 720 RLF R+R +H++LGGG AD+ +W+ K ++ G+ AWV+FE Y ++ P +PE+H+ EE + ++A+ +R +N +S +++A G++ + F LW++S +GG FLTL Y +LV++ T+P Y++YED +D Y +L++ Y Sbjct: 68 RLFGRERPVHKVLGGG--------------------KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQY 249 The following BLAST results are available for this feature:
BLAST of FC931188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931188 ID=FC931188; Name=FC931188; organism=Citrus clementina; type=EST; length=728bpback to top |