FC931225

Overview
NameFC931225
Unique NameFC931225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig657 contig Ccv1_Contig657:616..1330. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFE 358
            L+ V  P + ++   + EII R  K++  LFP     +     ++   VVK  +S+Y+  P  +P RP Q++P++ F+LAG YT Q Y+ SMEGA LSG+  +  I    E LV   K+ +  E
Sbjct:  443 LELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQKYLASMEGAVLSGKLCAQSIVQDYELLVRRSKKASTAE 566          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQ 343
            L+ V  P + ++   +D+II+    ++  LFP     +     ++   VVK  +S+Y+  P  +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+  +  I     EL+A R Q
Sbjct:  444 LELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ-DSELLATRGQ 561          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQ 343
            L+ V  P D ++   + EII    +++  LFP     +     ++   +VK  +S+Y+  P  +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+  +  I      L ALR Q
Sbjct:  442 LELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYSRL-ALRSQ 559          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELV 328
            L+ V  P + ++   + EII    K++  LFP     +     ++   VVK  +S+Y+  PG +P R  Q++PV+ F+LAG YTKQ Y+ SMEGA LSG+  +  I    E LV
Sbjct:  456 LELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLV 569          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVA 331
            L+ V  P + ++   + +II    K++  LFP     +     ++   VVK  +S+Y+  P  +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+  S  I    E L A
Sbjct:  438 LELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCSQSIVQDYELLAA 552          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGR 286
            L+ V  P + ++   + EII    +++  LFP     +     ++   VVK  +S+Y+  P  +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+
Sbjct:  450 LELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGK 549          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGR 286
            L+ V  P + ++   + EII    +++  LFP     +     ++   VVK  +S+Y+  P  +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+
Sbjct:  450 LELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGK 549          
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 2
Query:    2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEEL 325
            L+ V  P   ++   +++I+     ++  LFP     E    +    +VK   S+Y+  PG+  +RPDQ +P+ NFFL G YT Q Y+ SMEGA LSG+  +  I    +EL
Sbjct:  349 LELVFAPAKDWIGRSDEDILAATMAEIEKLFPQHFSGENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIIARQDEL 460          
The following BLAST results are available for this feature:
BLAST of FC931225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_NARPS6.431e-1435.48Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOYBN1.097e-1336.13Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE7.110e-1336.13Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_CAPAN7.110e-1337.72Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH9.286e-1336.52Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ4.609e-1237.00Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI4.609e-1237.00Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNE76.019e-1234.82Phytoene dehydrogenase OS=Synechococcus elongatus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34102H04EF PostHarvP1 Citrus clementina cDNA clone C34102H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931225 ID=FC931225; Name=FC931225; organism=Citrus clementina; type=EST; length=715bp
ACTCCAATGTGTTTTGACGCCTGGCGATCCTTACATGCCCTTACCAAATG
ATGAAATCATAAGGAGAGTGGCAAAGCAGGTTTTAGCTCTATTTCCATCA
TCCCAAGGTTTAGAAGTTATTTGGTCATCTGTTGTCAAAATCGGGCAATC
TTTGTACCGTGAGGGACCTGGTAAAGACCCCTTCAGACCTGATCAAAAGA
CACCTGTGAAGAACTTCTTCCTTGCTGGCTCGTATACAAAACAGGATTAC
ATAGATAGTATGGAAGGAGCAACTTTGTCTGGTAGACAAGCCTCAGCCTA
CATATGCAATGCCGGGGAAGAATTAGTAGCACTGAGGAAGCAGCTTGCTG
CCTTTGAATCTCAAGAACAAATGGAAGCTCCAACTACTACTAATGATGAA
CTAAGTCTTGTGTGATCGCAATCTGTTTGAGGTGCAGCGGCAGGAGTAAG
GTTTTTCCACATCTAAACGCCCTTCCCTTTTAGAGGATTACATAGATAGT
ATGGGATGAGCAATTTGCTGCCTTAATATGAATCTCAAGAACAAATGGAA
AATCCAGCTTTCACTGATGAGATGATGCAGCTGGAGTAAGGGTTTCCAAT
ACCTATGTAATTTCAATGAGATAGCCAATTTTCATAAAATTCATTAGTAA
GTTAATGGACATGAGGCCTAACCTACTATGTATGACTGTTTCTCTTACGA
GACAGCAATTTGTGC
back to top