FC931225
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 44/124 (35.48%), Postives = 68/124 (54.84%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFE 358 L+ V P + ++ + EII R K++ LFP + ++ VVK +S+Y+ P +P RP Q++P++ F+LAG YT Q Y+ SMEGA LSG+ + I E LV K+ + E Sbjct: 443 LELVFAPAEEWISRSDSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTNQKYLASMEGAVLSGKLCAQSIVQDYELLVRRSKKASTAE 566
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQ 343 L+ V P + ++ +D+II+ ++ LFP + ++ VVK +S+Y+ P +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+ + I EL+A R Q Sbjct: 444 LELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ-DSELLATRGQ 561
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13 Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQ 343 L+ V P D ++ + EII +++ LFP + ++ +VK +S+Y+ P +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+ + I L ALR Q Sbjct: 442 LELVFAPADEWIGRSDTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYSRL-ALRSQ 559
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13 Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELV 328 L+ V P + ++ + EII K++ LFP + ++ VVK +S+Y+ PG +P R Q++PV+ F+LAG YTKQ Y+ SMEGA LSG+ + I E LV Sbjct: 456 LELVFAPAEEWVSRSDSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLV 569
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13 Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVA 331 L+ V P + ++ + +II K++ LFP + ++ VVK +S+Y+ P +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+ S I E L A Sbjct: 438 LELVFAPAEEWISRTDSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKFCSQSIVQDYELLAA 552
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12 Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGR 286 L+ V P + ++ + EII +++ LFP + ++ VVK +S+Y+ P +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+ Sbjct: 450 LELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGK 549
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12 Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGR 286 L+ V P + ++ + EII +++ LFP + ++ VVK +S+Y+ P +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+ Sbjct: 450 LELVFAPAEEWVGRSDTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGK 549
BLAST of FC931225 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 2 Query: 2 LQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEEL 325 L+ V P ++ +++I+ ++ LFP E + +VK S+Y+ PG+ +RPDQ +P+ NFFL G YT Q Y+ SMEGA LSG+ + I +EL Sbjct: 349 LELVFAPAKDWIGRSDEDILAATMAEIEKLFPQHFSGENPARLRKYKIVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIIARQDEL 460 The following BLAST results are available for this feature:
BLAST of FC931225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931225 ID=FC931225; Name=FC931225; organism=Citrus clementina; type=EST; length=715bpback to top |