FC931332

Overview
NameFC931332
Unique NameFC931332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931332_ssr120 microsatellite FC931332_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931332_ssr136 microsatellite FC931332_ssr136:136..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8311 contig Ccv1_Contig8311:55..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6A_CHICK (Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.211e-47
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 1
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLW    QE
Sbjct:   11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 73          

HSP 2 Score: 100.908 bits (250), Expect = 1.211e-47
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNK  L  K    IEEGE K      ++ ETSA+
Sbjct:   69 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.212e-47
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1
Query:  304 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLW    QE
Sbjct:    7 NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 71          

HSP 2 Score: 98.2117 bits (243), Expect = 1.212e-47
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDSSVAV+VYD+ +  SF  TTKWV++VR ERG DVIIVLVGNK  L  K     E+GE K      ++ ETSA+
Sbjct:   67 TAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAK 156          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.939e-47
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLW    QE
Sbjct:    8 LKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 70          

HSP 2 Score: 98.2117 bits (243), Expect = 5.939e-47
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  T+KW+++VRTERGSDVII+LVGNK  L  K     +EGE K      ++ ETSA+
Sbjct:   66 TAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAK 155          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPT6_YEAST (GTP-binding protein YPT6 OS=Saccharomyces cerevisiae GN=YPT6 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.384e-41
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1
Query:  307 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +L KYK+VFLG+Q VGKTS+ITRFMYD FD+ YQATIGIDFLSKTMYL+D+T+RLQLW    QE
Sbjct:    7 SLTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDTAGQE 70          

HSP 2 Score: 85.5001 bits (210), Expect = 7.384e-41
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKLILWTKGSF-IEEGE--AKLVSSCYVYETSAR 736
            ++GQERFRSLIPSYIRDS VA+IVYD+  R+SF    KW+E+V+ ERG + VI+ +VGNK  L  +     EEGE  AKL+ +    ETS +
Sbjct:   66 TAGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKSDLSDERQISTEEGEKKAKLLGAKIFMETSTK 157          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB41_HUMAN (Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.243e-38
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERF SLIPSYIRDS++AV+VYD+ +  SF  T KWVE VR ERG DV+I+L+GNK+ L  K     E+GE K  +   ++ ETSA+
Sbjct:   87 TAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAK 176          

HSP 2 Score: 88.5817 bits (218), Expect = 3.243e-38
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  307 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +L K KL+FLG+QSVGKTSII+RFMY+ F    QAT+GIDFLSKTMYLED+ V+LQLW    QE
Sbjct:   28 SLCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQE 91          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6A_RAT (Ras-related protein Rab-6A (Fragment) OS=Rattus norvegicus GN=Rab6a PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVSSCYVY-ETSAR 736
            ++GQERFRSLIPSYIRDS+VAV+VYD+ +  SF  TTKW+++VRTERGSDVII+LVGNK  L  K    IEEGE K      ++ ETSA+
Sbjct:    1 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 90          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.984e-21
Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R ++ A++ YD+  R SFL+   W+E+VR   GS+++ +L+GNK
Sbjct:   74 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 132          

HSP 2 Score: 57.7658 bits (138), Expect = 2.984e-21
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+W    QE
Sbjct:   19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.547e-21
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGS----FIEEGEAKLV--SSCYVYETSAR 736
            ++GQERF SL P Y R++  A++VYDV   QSF+    WV+E+  +   D+II LVGNK+ +  +G       EEGE KL        +ETSA+
Sbjct:   63 TAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGE-KLAEEKGLLFFETSAK 155          

HSP 2 Score: 51.2174 bits (121), Expect = 8.547e-21
Identity = 23/65 (35.38%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  304 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +++   KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++W    QE
Sbjct:    3 TSVTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 67          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.547e-21
Identity = 25/59 (42.37%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R ++ A++ YD++ R +FL+   W+E+VR   GS+++ +L+GNK
Sbjct:   72 TAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNK 130          

HSP 2 Score: 56.9954 bits (136), Expect = 8.547e-21
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+W    QE
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.547e-21
Identity = 25/59 (42.37%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R ++ A++ YD++ R +FL+   W+E+VR   GS+++ +L+GNK
Sbjct:   72 TAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNK 130          

HSP 2 Score: 56.9954 bits (136), Expect = 8.547e-21
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+W    QE
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76          
The following BLAST results are available for this feature:
BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
RAB6A_CHICK1.211e-4784.13Ras-related protein Rab-6A OS=Gallus gallus GN=RAB... [more]
RAB6A_CAEEL1.212e-4784.62Ras-related protein Rab-6.1 OS=Caenorhabditis eleg... [more]
RAB6B_CAEEL5.939e-4785.71Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
YPT6_YEAST7.384e-4175.00GTP-binding protein YPT6 OS=Saccharomyces cerevisi... [more]
RAB41_HUMAN3.243e-3854.44Ras-related protein Rab-41 OS=Homo sapiens GN=RAB4... [more]
RAB6A_RAT2.615e-2162.22Ras-related protein Rab-6A (Fragment) OS=Rattus no... [more]
RAB43_HUMAN2.984e-2144.07Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
VPS21_YEAST8.547e-2142.55Vacuolar protein sorting-associated protein 21 OS=... [more]
RAB43_RAT8.547e-2142.37Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB43_MOUSE8.547e-2142.37Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]

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Properties
Property NameValue
Genbank descriptionC34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT
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