FC931332

Overview
NameFC931332
Unique NameFC931332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.952e-17
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D + ++Y +TIG+DF  +T+  + +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68          

HSP 2 Score: 53.9138 bits (128), Expect = 2.952e-17
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R +   +IVYDV  ++SF N  +W+ E+      +V  +LVGNK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 122          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.954e-17
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGID   KT+ L+ + ++LQ+W    QE
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQE 69          

HSP 2 Score: 50.8322 bits (120), Expect = 2.954e-17
Identity = 22/59 (37.29%), Postives = 37/59 (62.71%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERF ++  SY R +   ++VYD+ + +SF N +KW+  +      DV  +L+GNK
Sbjct:   65 TAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNK 123          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RASEF_MOUSE (RAS and EF-hand domain-containing protein homolog OS=Mus musculus GN=Rasef PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.723e-17
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFRS+  SY R +   +++YDV   +SFLN  +WV+ V       + I+LVGNK
Sbjct:  484 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNVREWVDMVEDGTHRTIPIMLVGNK 542          

HSP 2 Score: 53.1434 bits (126), Expect = 3.723e-17
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 1
Query:  286 EKMAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +  + V++   YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLW    QE
Sbjct:  418 DNTSKVTSQKAYKIVLAGDAAVGKSSFLMRLCKNEFQGNTSATLGVDFQMKTLIVDGEQTVLQLWDTAGQE 488          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 3.836e-17
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQE 68          

HSP 2 Score: 53.1434 bits (126), Expect = 3.836e-17
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV    SF N  +W++E++      V  +LVGNK  L  K
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEK 128          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 55.4546 bits (132), Expect = 3.839e-17
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+  + +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68          

HSP 2 Score: 53.5286 bits (127), Expect = 3.839e-17
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R +   +IVYDV   +SF N  +W+ E+      +V  +LVGNK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNK 122          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.988e-17
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV  R +F     W+ E+ T    +D++ +LVGNK+
Sbjct:   64 TAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKI 124          

HSP 2 Score: 52.373 bits (124), Expect = 4.988e-17
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +W    QE
Sbjct:    6 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQE 68          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.991e-17
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSD-VIIVLVGNKLILWTKGSFIEEG 688
            ++GQERFR+L PSY R +   + VYDV SR SF     W+ EV T   +D VI ++V NK+ +  +    EEG
Sbjct:   67 TAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNVIKMMVANKIDMPNRTVTREEG 139          

HSP 2 Score: 52.7582 bits (125), Expect = 4.991e-17
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1
Query:  304 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            S L   K++ +G+  VGK+S++ RF+ D FD    ATIG+DF   +M ++   V+L +W    QE
Sbjct:    7 SPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQE 71          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 4.991e-17
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+  + +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQE 68          

HSP 2 Score: 53.5286 bits (127), Expect = 4.991e-17
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W+ E+      +V  +LVGNK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 122          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RASEF_HUMAN (RAS and EF-hand domain-containing protein OS=Homo sapiens GN=RASEF PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.269e-17
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFRS+  SY R +   +++YDV   +SFLN  +WV+ +       V I+LVGNK
Sbjct:  597 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNK 655          

HSP 2 Score: 51.9878 bits (123), Expect = 6.269e-17
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 1
Query:  304 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            S+   YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLW    QE
Sbjct:  537 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 601          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 6.470e-17
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWT-KGSFIEEGEAKL-VSSCYVYETSA 733
            ++GQERFR++  +Y R +  A++VYD+  R +F +  +W++E++    + V  +LVGNK  L   +   +EEG+A       +  ETSA
Sbjct:   68 TAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSA 156          

HSP 2 Score: 53.5286 bits (127), Expect = 6.470e-17
Identity = 21/60 (35.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V +GD +VGK+++++R+  ++F    +ATIG++F +++M +E + V+ Q+W    QE
Sbjct:   13 FKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQE 72          
The following BLAST results are available for this feature:
BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
YPTM2_MAIZE2.952e-1738.33GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RAB10_CHICK2.954e-1743.33Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RASEF_MOUSE3.723e-1744.07RAS and EF-hand domain-containing protein homolog ... [more]
RAB1B_DICDI3.836e-1738.33Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RBD2A_ARATH3.839e-1738.33Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RB18B_DANRE4.988e-1742.62Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RAB18_CAEBR4.991e-1743.84Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RIC1_ORYSJ4.991e-1738.33Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RASEF_HUMAN6.269e-1744.07RAS and EF-hand domain-containing protein OS=Homo ... [more]
ARA1_ARATH6.470e-1734.83Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT
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