FC931332

Overview
NameFC931332
Unique NameFC931332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 6.878e-16
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            KL+ +GD  VGK+ ++ RF  D+F  ++  TIGIDF  +T+ + ++ V+LQ+W    QE
Sbjct:   13 KLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQE 71          

HSP 2 Score: 52.373 bits (124), Expect = 6.878e-16
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEA 694
            ++GQERFR++  +Y R +   ++VYDV   +SF N   W + V++     V ++LVGNK  L  K     E+G+A
Sbjct:   67 TAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQA 141          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 8.862e-16
Identity = 23/60 (38.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKL 652
            ++GQERFRS+  +Y RD+   +++YDV ++ SF +   W+ E++     DV+++L+GNK+
Sbjct:  120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKV 179          

HSP 2 Score: 47.7506 bits (112), Expect = 8.862e-16
Identity = 23/61 (37.70%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+W    QE
Sbjct:   64 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQE 124          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 57.7658 bits (138), Expect = 1.157e-15
Identity = 24/59 (40.68%), Postives = 40/59 (67.80%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFRS+  +Y RD+   +++YD+ ++ SF N   W+ E+      DV+I+L+GNK
Sbjct:   86 TAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNK 144          

HSP 2 Score: 46.2098 bits (108), Expect = 1.157e-15
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  322 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            K++ LGD  VGKT  + +F    F   T+ AT+GIDF +K + ++   V+LQ+W    QE
Sbjct:   31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQE 90          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.159e-15
Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK--LILWTKGSFIEEGEAKLVSSCYVYETSA 733
            ++GQERFRS+  SY R ++ A++VYD+ SR+++   T W+ + RT    +++I+L GNK  L    + +F+E       +     ETSA
Sbjct:   64 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 152          

HSP 2 Score: 44.2838 bits (103), Expect = 1.159e-15
Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+W    QE
Sbjct:    9 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 68          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.510e-15
Identity = 22/59 (37.29%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            K++ +GD  VGK+ ++ RF  ++F ++Y +TIG+DF  +T+ L+ + ++LQ+W    QE
Sbjct:   35 KILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQE 93          

HSP 2 Score: 49.2914 bits (116), Expect = 1.510e-15
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERF+++  SY R +   +IVYD+ S  SF +  +W+ +V       V+ ++VGNK  L +K
Sbjct:   89 TAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSK 153          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.511e-15
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            KL+ +GD  VGK+ ++ RF  D F  ++  TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:   11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69          

HSP 2 Score: 49.2914 bits (116), Expect = 1.511e-15
Identity = 21/59 (35.59%), Postives = 35/59 (59.32%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  +Y R +   +++YDV  ++SF N   W   V      +V  +L+GNK
Sbjct:   65 TAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNK 123          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.963e-15
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            KL+ +GD  VGK+ ++ RF    F  ++ ATIGIDF  +T+ LE + ++LQ+W    QE
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQE 75          

HSP 2 Score: 49.2914 bits (116), Expect = 1.963e-15
Identity = 27/91 (29.67%), Postives = 48/91 (52.75%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCY---VYETSAR 736
            ++GQERFR++  +Y R +   ++VYDV   +SF +   W+  +       V  +L+GNK  + T+   ++    K ++  Y     ETSA+
Sbjct:   71 TAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDM-TEKKVVDSSRGKSLADEYGIKFLETSAK 160          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.968e-15
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 480
            +K V  GD  VGKTSI+ R   D F  T+  TIGI+F  KT+Y+E + ++LQ+W
Sbjct:    9 FKFVLAGDSGVGKTSILFRITDDTFTETH-ITIGIEFKIKTVYIEGKPIKLQIW 61          

HSP 2 Score: 48.1358 bits (113), Expect = 1.968e-15
Identity = 22/59 (37.29%), Postives = 38/59 (64.41%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++G++RFR +  S+ R     +IVYDV  ++SF N   W+E++R     +VI +++GNK
Sbjct:   63 TAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNK 120          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RB43L_HUMAN (Putative Rab-43-like protein ENSP00000330714 OS=Homo sapiens PE=5 SV=3)

HSP 1 Score: 65.0846 bits (157), Expect = 1.973e-15
Identity = 26/59 (44.07%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R ++ A++ YD+  R SFL+   W+E+VR   GS+++ +L+GNK
Sbjct:   43 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 101          

HSP 2 Score: 38.1206 bits (87), Expect = 1.973e-15
Identity = 16/45 (35.56%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  364 IITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+W    QE
Sbjct:    3 VVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 47          
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 55.4546 bits (132), Expect = 2.529e-15
Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKL 652
            ++GQERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK+
Sbjct:  120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 179          

HSP 2 Score: 47.3654 bits (111), Expect = 2.529e-15
Identity = 23/61 (37.70%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+W    QE
Sbjct:   64 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 124          
The following BLAST results are available for this feature:
BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
RYL1_YARLI6.878e-1640.68Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB26_BOVIN8.862e-1638.33Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB37_HUMAN1.157e-1540.68Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB4B_DANRE1.159e-1535.96Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB1C_DICDI1.510e-1537.29Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
YPT2_SCHPO1.511e-1540.68GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8B_DICDI1.963e-1542.37Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RABF1_DICDI1.968e-1548.15Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RB43L_HUMAN1.973e-1544.07Putative Rab-43-like protein ENSP00000330714 OS=Ho... [more]
RAB26_HUMAN2.529e-1540.00Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT
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