FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB7L_HUMAN (Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.229e-14
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWTREIQE 498
            +K++ +GD +VGKTS++ R+  D F   Y++T+G+DF  K +   D   VRLQLW    QE
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIVRLQLWDIAGQE 68

HSP 2 Score: 45.0542 bits (105), Expect = 1.229e-14
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = 2

Query:  476 SGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE----RGSDVIIVLVGNK 649
            +GQERF S+   Y RD+S  VI++DV +  +F N+ +W +++ ++     G  V  +L+ NK
Sbjct:   65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLANK 126

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.593e-14
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK--LILWTKGSFIEEGEAKLVSSCYVYETSA 733
            ++GQERFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK  L    + +F+E       +     ETSA
Sbjct:   64 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 152

HSP 2 Score: 42.3578 bits (98), Expect = 1.593e-14
Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+W    QE
Sbjct:    9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 68

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.593e-14
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK--LILWTKGSFIEEGEAKLVSSCYVYETSA 733
            ++GQERFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK  L    + +F+E       +     ETSA
Sbjct:   64 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 152

HSP 2 Score: 42.3578 bits (98), Expect = 1.593e-14
Identity = 19/60 (31.67%), Postives = 36/60 (60.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+W    QE
Sbjct:    9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 68

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB7L_RAT (Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.596e-14
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWTREIQE 498
            +K++ +GD +VGKTS++ R+  D F   Y++T+G+DF  K +   D   VRLQLW    QE
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQE 68

HSP 2 Score: 44.669 bits (104), Expect = 1.596e-14
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = 2

Query:  476 SGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE----RGSDVIIVLVGNK 649
            +GQERF S+   Y RD+S  VI++DV +  +F N+ +W +++ ++     G  V  +L+ NK
Sbjct:   65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANK 126

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB7L_MOUSE (Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.596e-14
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWTREIQE 498
            +K++ +GD +VGKTS++ R+  D F   Y++T+G+DF  K +   D   VRLQLW    QE
Sbjct:    8 FKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQE 68

HSP 2 Score: 44.669 bits (104), Expect = 1.596e-14
Identity = 22/62 (35.48%), Postives = 38/62 (61.29%), Query Frame = 2

Query:  476 SGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE----RGSDVIIVLVGNK 649
            +GQERF S+   Y RD+S  VI++DV +  +F N+ +W +++ ++     G  V  +L+ NK
Sbjct:   65 AGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANK 126

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RB39A_MOUSE (Ras-related protein Rab-39A OS=Mus musculus GN=Rab39 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.069e-14
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFRS+  SY R+S    +V+D+ +R+SF +   W+EE +   +   ++ +LVG+K  L ++     E   +L + C +   ETSA+
Sbjct:   69 TAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQRQVSREEAERLSTDCGMKYIETSAK 159

HSP 2 Score: 45.0542 bits (105), Expect = 2.069e-14
Identity = 21/66 (31.82%), Postives = 40/66 (60.61%), Query Frame = 1

Query:  316 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLE-DRTVRLQLWTREIQE 498
            +++L+ +GD +VGK+ ++ RF   +F   +      T+G+DF S+ + +E  + ++LQLW    QE
Sbjct:    8 QFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQE 73

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 2.070e-14
Identity = 31/89 (34.83%), Postives = 52/89 (58.43%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK--LILWTKGSFIEEGEAKLVSSCYVYETSA 733
            ++GQERFRS+  SY R ++ A++VYD+ SR+++   T W+ + R     +++I+L GNK  L    + +F+E       +     ETSA
Sbjct:   64 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 152

HSP 2 Score: 41.9726 bits (97), Expect = 2.070e-14
Identity = 18/60 (30.00%), Postives = 37/60 (61.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K + +G+   GK+ ++ +F+  +F +    TIG++F SK + + ++ V+LQ+W    QE
Sbjct:    9 FKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQE 68

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.682e-14
Identity = 21/60 (35.00%), Postives = 38/60 (63.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLW    QE
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQE 93

HSP 2 Score: 46.9802 bits (110), Expect = 2.682e-14
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 2

Query:  473 SSGQERFR-SLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNK 649
            ++GQERFR S++  Y R+    V VYD+ +  SF +   W+EE +     SD+  +LVGNK
Sbjct:   89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLASDIPRILVGNK 149

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.482e-14
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV---YETSA 733
            ++GQE+FRS+  +Y R ++ AV+VYDV ++ SF   + W+ ++R    S + +VL G+K  L  +     E  A+  S  ++   +ETS+
Sbjct:   69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSS 158

HSP 2 Score: 41.9726 bits (97), Expect = 3.482e-14
Identity = 19/63 (30.16%), Postives = 37/63 (58.73%), Query Frame = 1

Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL----EDRTVRLQLWTREIQE 498
            K+V  G    GK+ ++ RF+ +++D+    T+GIDF S+ + +    + + ++LQ+W    QE
Sbjct:   11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQE 73

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RB39A_HUMAN (Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 4.538e-14
Identity = 32/91 (35.16%), Postives = 54/91 (59.34%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFRS+  SY R+S    +V+D+ +R+SF +   W+EE +   +   ++ +LVG+K  L ++     E   KL + C +   ETSA+
Sbjct:   69 TAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAK 159

HSP 2 Score: 43.8986 bits (102), Expect = 4.538e-14
Identity = 21/66 (31.82%), Postives = 39/66 (59.09%), Query Frame = 1

Query:  316 KYKLVFLGDQSVGKTSIITRFMYDKFDN----TYQATIGIDFLSKTMYLE-DRTVRLQLWTREIQE 498
            +++L+ +GD +VGK+ ++ RF   +F          T+G+DF S+ + +E  + ++LQLW    QE
Sbjct:    8 QFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQE 73

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RAB7L_HUMAN	1.229e-14	42.62	Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB...	[more]
RAB4A_RAT	1.593e-14	34.83	Ras-related protein Rab-4A OS=Rattus norvegicus GN...	[more]
RAB4A_HUMAN	1.593e-14	34.83	Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4...	[more]
RAB7L_RAT	1.596e-14	42.62	Ras-related protein Rab-7L1 OS=Rattus norvegicus G...	[more]
RAB7L_MOUSE	1.596e-14	42.62	Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab...	[more]
RB39A_MOUSE	2.069e-14	34.07	Ras-related protein Rab-39A OS=Mus musculus GN=Rab...	[more]
RAB4A_DANRE	2.070e-14	34.83	Ras-related protein Rab-4A OS=Danio rerio GN=rab4a...	[more]
RB33B_PONAB	2.682e-14	35.00	Ras-related protein Rab-33B OS=Pongo abelii GN=RAB...	[more]
YPT4_SCHPO	3.482e-14	33.33	GTP-binding protein ypt4 OS=Schizosaccharomyces po...	[more]
RB39A_HUMAN	4.538e-14	35.16	Ras-related protein Rab-39A OS=Homo sapiens GN=RAB...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT