FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC931332_ssr120	microsatellite	FC931332_ssr120:120..131.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC931332_ssr136	microsatellite	FC931332_ssr136:136..159.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8311	contig	Ccv1_Contig8311:55..809.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.147e-20
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT +I RF  D F+NTY +TIGIDF  +T+ +E + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQE 68

HSP 2 Score: 53.9138 bits (128), Expect = 4.147e-20
Identity = 27/90 (30.00%), Postives = 51/90 (56.67%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERF+++  +Y R +   ++VYD+   +SF N   W++ ++    + V  +L+GNK  +  K   ++E   KL     +  +ETSA+
Sbjct:   64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.121e-20
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKG--SFIEEGEAKLVSSCYVYETSA 733
            ++GQERFRS++ SY R S+   +VYDV +R+S+ + T W+ +V++    DV I+LVGNK  L  +   +F+E       +     ETSA
Sbjct:   63 TAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSA 151

HSP 2 Score: 52.7582 bits (125), Expect = 9.121e-20
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 1

Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            K + +G QSVGK+ ++ RF+ +KF +    TIG+DF S+ + ++ + V+LQ+W    QE
Sbjct:    9 KFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQE 67

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB6C_HUMAN (Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.099e-19
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 1

Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQESHS*LHQRFL 528
            L K+KLVFLG+QSV KTS+ITRF YD FDNTYQA IGIDFLSKTMYLED T+ L+LW    QE    L  R++
Sbjct:   11 LRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYI 83

HSP 2 Score: 93.5893 bits (231), Expect = 1.215e-18
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAK 697
            ++GQER RSLIP YIRDS+ AV+VYD+ +  SF  TTKW+++VRTERGSDVII LVGN+  L  K    +EEGE K
Sbjct:   69 TAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERK 144

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.187e-19
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K +F+GD  VGK+SI+ RF  D F  +Y +TIG+DF  KT+Y+E + ++LQ+W    QE
Sbjct:    9 FKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQE 68

HSP 2 Score: 50.8322 bits (120), Expect = 1.187e-19
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR    S  R     ++VYDV  ++SF N  KW++E+      +VI +++GNK
Sbjct:   64 TAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNK 122

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.001e-19
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++   Y R +  A+IVYD+ S+ SF N T+W+ E+R     D++I++VGNK
Sbjct:   66 TAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNK 124

HSP 2 Score: 54.6842 bits (130), Expect = 2.001e-19
Identity = 22/60 (36.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V +GD +VGK++++ RF  ++F    +ATIG+DF +K++ ++++T+  Q W    QE
Sbjct:   11 FKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQE 70

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.008e-19
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT +I RF  D F+NTY +TIGIDF  +T+ +E + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 68

HSP 2 Score: 51.9878 bits (123), Expect = 2.008e-19
Identity = 27/90 (30.00%), Postives = 50/90 (55.56%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERF+++  +Y R +   ++VYD+   +SF N   W++ ++    + V  +L+GNK  +  K    +E   KL     +  +ETSA+
Sbjct:   64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.008e-19
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT +I RF  D F+NTY +TIGIDF  +T+ +E + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQE 68

HSP 2 Score: 51.9878 bits (123), Expect = 2.008e-19
Identity = 27/90 (30.00%), Postives = 50/90 (55.56%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERF+++  +Y R +   ++VYD+   +SF N   W++ ++    + V  +L+GNK  +  K    +E   KL     +  +ETSA+
Sbjct:   64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.612e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 58.151 bits (139), Expect = 2.612e-19
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  R+S+ N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 4.415e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:   12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71

HSP 2 Score: 57.3806 bits (137), Expect = 4.415e-19
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK  L TK
Sbjct:   67 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 4.415e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:   12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71

HSP 2 Score: 57.3806 bits (137), Expect = 4.415e-19
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK  L TK
Sbjct:   67 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RAB13_MESAU	4.147e-20	48.33	Ras-related protein Rab-13 OS=Mesocricetus auratus...	[more]
RAB4_DICDI	9.121e-20	39.33	Ras-related protein Rab-4 OS=Dictyostelium discoid...	[more]
RAB6C_HUMAN	1.099e-19	67.12	Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6...	[more]
RABA_DICDI	1.187e-19	46.67	Ras-related protein RabA OS=Dictyostelium discoide...	[more]
RB11C_DICDI	2.001e-19	45.76	Ras-related protein Rab-11C OS=Dictyostelium disco...	[more]
RAB13_HUMAN	2.008e-19	48.33	Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1...	[more]
RAB13_BOVIN	2.008e-19	48.33	Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ...	[more]
RAB1B_MACFA	2.612e-19	40.00	Ras-related protein Rab-1B OS=Macaca fascicularis ...	[more]
RAB1A_RAT	4.415e-19	40.00	Ras-related protein Rab-1A OS=Rattus norvegicus GN...	[more]
RAB1A_MOUSE	4.415e-19	40.00	Ras-related protein Rab-1A OS=Mus musculus GN=Rab1...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT