FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 4.415e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:   12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71

HSP 2 Score: 57.3806 bits (137), Expect = 4.415e-19
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK  L TK
Sbjct:   67 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 4.415e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:   12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71

HSP 2 Score: 57.3806 bits (137), Expect = 4.415e-19
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK  L TK
Sbjct:   67 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.417e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 57.3806 bits (137), Expect = 4.417e-19
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.742e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:   12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71

HSP 2 Score: 56.9954 bits (136), Expect = 5.742e-19
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W++E+      +V  +LVGNK  L TK
Sbjct:   67 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTK 131

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.745e-19
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT +I RF  D F++TY +TIGIDF  +T+ +E + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQE 68

HSP 2 Score: 52.373 bits (124), Expect = 5.745e-19
Identity = 27/90 (30.00%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERF+++  +Y R +   ++VYD+   +SF N   W++ ++    + V  +L+GNK  +  K     E   KL     +  +ETSA+
Sbjct:   64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.472e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 56.6102 bits (135), Expect = 7.472e-19
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.472e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 56.6102 bits (135), Expect = 7.472e-19
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.472e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 56.6102 bits (135), Expect = 7.472e-19
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.472e-19
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 56.6102 bits (135), Expect = 7.472e-19
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 9.717e-19
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT +I RF  D F++TY +TIGIDF  +T+ +E + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQE 68

HSP 2 Score: 51.2174 bits (121), Expect = 9.717e-19
Identity = 26/90 (28.89%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERF+++  +Y R +   ++VYD+   +SF N   W++ ++    + V  +L+GNK  +  K     E   +L     +  +ETSA+
Sbjct:   64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAK 153

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RAB1A_HUMAN	4.415e-19	40.00	Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1...	[more]
RAB1A_CANFA	4.415e-19	40.00	Ras-related protein Rab-1A OS=Canis familiaris GN=...	[more]
RAB1_DISOM	4.417e-19	40.00	Ras-related protein ORAB-1 OS=Discopyge ommata PE=...	[more]
RAB1A_LYMST	5.742e-19	40.00	Ras-related protein Rab-1A OS=Lymnaea stagnalis GN...	[more]
RAB13_MOUSE	5.745e-19	46.67	Ras-related protein Rab-13 OS=Mus musculus GN=Rab1...	[more]
RAB1B_PONAB	7.472e-19	40.00	Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1...	[more]
RAB1B_MOUSE	7.472e-19	40.00	Ras-related protein Rab-1B OS=Mus musculus GN=Rab1...	[more]
RAB1B_HUMAN	7.472e-19	40.00	Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1...	[more]
RAB1B_BOVIN	7.472e-19	40.00	Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ...	[more]
RAB13_RAT	9.717e-19	46.67	Ras-related protein Rab-13 OS=Rattus norvegicus GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT