FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC931332_ssr120	microsatellite	FC931332_ssr120:120..131.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC931332_ssr136	microsatellite	FC931332_ssr136:136..159.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8311	contig	Ccv1_Contig8311:55..809.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 2.776e-18
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68

HSP 2 Score: 53.1434 bits (126), Expect = 2.776e-18
Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     SDV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 2.776e-18
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLIL 658
            ++GQERFRS+ P Y R +S  ++ YDV SR SF     W+ E++    SD+II +VG K+ L
Sbjct:   61 TAGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDL 122

HSP 2 Score: 55.0694 bits (131), Expect = 2.776e-18
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 1

Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            K+V LG Q VGKT  +TR++ +KF     +TIG  F  K + + D TVRLQ+W    QE
Sbjct:    7 KIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQE 65

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 3.610e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD SVGK+  + RF  D + ++Y +TIG+DF  +T+ +E +TV+LQ+W    QE
Sbjct:    9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQE 68

HSP 2 Score: 53.1434 bits (126), Expect = 3.610e-18
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R +   +IVYD+   +SF N  +W++E+       V  +LVGNK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNK 122

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.614e-18
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 54.299 bits (129), Expect = 3.614e-18
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSARLA 742
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W+ E+      +V  +LVGNK  L  K     +   +   S  +   ETSA+ A
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNA 155

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.616e-18
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+W    QE
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQE 69

HSP 2 Score: 51.6026 bits (122), Expect = 3.616e-18
Identity = 28/92 (30.43%), Postives = 53/92 (57.61%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVS---SCYVYETSARL 739
            ++GQERF ++  SY R +   ++VYD+ + +SF N +KW+  +      DV  +L+GNK  +  K   + +G+ + ++       +ETSA++
Sbjct:   65 TAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDK-RVVPKGKGEQIAREHGIRFFETSAKV 155

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.616e-18
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L  + ++LQ+W    QE
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQE 69

HSP 2 Score: 52.373 bits (124), Expect = 3.616e-18
Identity = 31/95 (32.63%), Postives = 51/95 (53.68%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK-------LILWTKGSFIEEGEAKLVSSCYVYETSAR 736
            ++GQERF ++  SY R +   ++VYD+ + +SF N +KW+  +      DV  +L+GNK       ++L +KG  I    A        +ETSA+
Sbjct:   65 TAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHA-----IRFFETSAK 154

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 4.694e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 51.6026 bits (122), Expect = 4.694e-18
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 4.694e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 51.6026 bits (122), Expect = 4.694e-18
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.694e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 51.6026 bits (122), Expect = 4.694e-18
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.694e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 51.6026 bits (122), Expect = 4.694e-18
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RAB8B_HUMAN	2.776e-18	43.33	Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8...	[more]
RYL2_YARLI	2.776e-18	45.16	Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo...	[more]
YPTM1_MAIZE	3.610e-18	43.33	GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=...	[more]
YPT1_PHYIN	3.614e-18	40.00	Ras-like GTP-binding protein YPT1 OS=Phytophthora ...	[more]
RAB10_CANFA	3.616e-18	45.00	Ras-related protein Rab-10 OS=Canis familiaris GN=...	[more]
RAB10_DISOM	3.616e-18	45.00	Ras-related protein Rab-10 OS=Discopyge ommata PE=...	[more]
RAB8A_RAT	4.694e-18	43.33	Ras-related protein Rab-8A OS=Rattus norvegicus GN...	[more]
RAB8A_MOUSE	4.694e-18	43.33	Ras-related protein Rab-8A OS=Mus musculus GN=Rab8...	[more]
RAB8A_MACFA	4.694e-18	43.33	Ras-related protein Rab-8A OS=Macaca fascicularis ...	[more]
RAB8A_HUMAN	4.694e-18	43.33	Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT