FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.694e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 51.6026 bits (122), Expect = 4.694e-18
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.694e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 51.6026 bits (122), Expect = 4.694e-18
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.694e-18
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68

HSP 2 Score: 52.373 bits (124), Expect = 4.694e-18
Identity = 25/76 (32.89%), Postives = 43/76 (56.58%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKL 700
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     SDV  +++GNK  +  K    +E   KL
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKL 139

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.696e-18
Identity = 24/60 (40.00%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K++ +GD  VGK+ ++ RF  D + +T+ +TIG+DF  KT+ L+ +T++LQ+W    QE
Sbjct:   11 FKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQE 70

HSP 2 Score: 53.5286 bits (127), Expect = 4.696e-18
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCY---VYETSARLA 742
            ++GQERFR++  SY R +   ++VYD   + SF N  +W+ E+      +V  +LVGNK  L      ++  +AK  +  Y     ETSA+ A
Sbjct:   66 TAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDL-VNEKVVDSNQAKSFAESYGIPFIETSAKNA 157

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.699e-18
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRT-ERGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV+S+QSF     W+ E+ T     D++ +LVGNK+
Sbjct:   65 TAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKLDAWLNELETFSTKHDMVKMLVGNKI 125

HSP 2 Score: 53.1434 bits (126), Expect = 4.699e-18
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1

Query:  322 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ +E    +L +W    QE
Sbjct:   11 KILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQE 69

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.702e-18
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+W    QE
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQE 69

HSP 2 Score: 51.2174 bits (121), Expect = 4.702e-18
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVS---SCYVYETSAR 736
            ++GQERF ++  SY R +   ++VYD+ + +SF N +KW+  +      DV  +L+GNK  +  K   + +G+ + ++       +ETSA+
Sbjct:   65 TAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDK-RVVPKGKGEQIAREHGIRFFETSAK 154

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.702e-18
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+W    QE
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQE 69

HSP 2 Score: 51.2174 bits (121), Expect = 4.702e-18
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVS---SCYVYETSAR 736
            ++GQERF ++  SY R +   ++VYD+ + +SF N +KW+  +      DV  +L+GNK  +  K   + +G+ + ++       +ETSA+
Sbjct:   65 TAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDK-RVVPKGKGEQIAREHGIRFFETSAK 154

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.702e-18
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+W    QE
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQE 69

HSP 2 Score: 51.2174 bits (121), Expect = 4.702e-18
Identity = 28/91 (30.77%), Postives = 52/91 (57.14%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVS---SCYVYETSAR 736
            ++GQERF ++  SY R +   ++VYD+ + +SF N +KW+  +      DV  +L+GNK  +  K   + +G+ + ++       +ETSA+
Sbjct:   65 TAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDK-RVVPKGKGEQIAREHGIRFFETSAK 154

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.707e-18
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERF SL P Y R S+ AVIVYD+  + SF    KWV+E++     ++++ + GNK
Sbjct:   61 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 119

HSP 2 Score: 50.447 bits (119), Expect = 4.707e-18
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1

Query:  307 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            A+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +W    QE
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 65

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 6.097e-18
Identity = 31/89 (34.83%), Postives = 54/89 (60.67%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWT-KGSFIEEGEAKLVS-SCYVYETSA 733
            ++GQERFR++  +Y R +  A++VYD+    +F N  +W++E+ T   + V  +L+GNK  L + +   +EEG++   S   +  ETSA
Sbjct:   68 TAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSA 156

HSP 2 Score: 55.0694 bits (131), Expect = 6.097e-18
Identity = 21/60 (35.00%), Postives = 44/60 (73.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V +GD +VGK++++TR+  ++F+   +ATIG++F +++M ++ + V+ Q+W    QE
Sbjct:   13 FKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQE 72

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RAB8A_CANFA	4.694e-18	43.33	Ras-related protein Rab-8A OS=Canis familiaris GN=...	[more]
RAB8A_BOVIN	4.694e-18	43.33	Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ...	[more]
RAB8B_BOVIN	4.694e-18	43.33	Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ...	[more]
RAB1D_DICDI	4.696e-18	40.00	Ras-related protein Rab-1D OS=Dictyostelium discoi...	[more]
RB18A_LYMST	4.699e-18	45.90	Ras-related protein Rab-18A OS=Lymnaea stagnalis G...	[more]
RAB10_PONAB	4.702e-18	45.00	Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1...	[more]
RAB10_MOUSE	4.702e-18	45.00	Ras-related protein Rab-10 OS=Mus musculus GN=Rab1...	[more]
RAB10_HUMAN	4.702e-18	45.00	Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1...	[more]
RAB31_HUMAN	4.707e-18	44.07	Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3...	[more]
ARA4_ARATH	6.097e-18	34.83	Ras-related protein ARA-4 OS=Arabidopsis thaliana ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT