FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC931332_ssr120	microsatellite	FC931332_ssr120:120..131.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC931332_ssr136	microsatellite	FC931332_ssr136:136..159.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8311	contig	Ccv1_Contig8311:55..809.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.103e-18
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 51.2174 bits (121), Expect = 6.103e-18
Identity = 28/90 (31.11%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   W+  +     +DV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 7.945e-18
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T  LE +TV+LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68

HSP 2 Score: 51.9878 bits (123), Expect = 7.945e-18
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R +   +IVYDV  + SF N  +W++E+       V  +LVGNK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNK 122

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.945e-18
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 53.1434 bits (126), Expect = 7.945e-18
Identity = 25/65 (38.46%), Postives = 41/65 (63.08%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQER R++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.945e-18
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  +Y R +   ++VYDV S +SF+N  +W+ E+  +   DV  +LVGNK
Sbjct:   64 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNK 121

HSP 2 Score: 55.0694 bits (131), Expect = 7.945e-18
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+W    QE
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 68

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.945e-18
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  +Y R +   ++VYDV S +SF+N  +W+ E+  +   DV  +LVGNK
Sbjct:   64 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNK 121

HSP 2 Score: 55.0694 bits (131), Expect = 7.945e-18
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+W    QE
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 68

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 7.945e-18
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  +Y R +   ++VYDV S +SF+N  +W+ E+  +   DV  +LVGNK
Sbjct:   64 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNK 121

HSP 2 Score: 55.0694 bits (131), Expect = 7.945e-18
Identity = 24/60 (40.00%), Postives = 38/60 (63.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+W    QE
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 68

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 7.959e-18
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERF SL P Y R S+ AVIVYD+  + SF    KWV+E++     ++++ + GNK
Sbjct:   61 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNK 119

HSP 2 Score: 50.447 bits (119), Expect = 7.959e-18
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1

Query:  307 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            A+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +W    QE
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 65

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.959e-18
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERF SL P Y R S+ AVIVYD+  + SF    KWV+E++     ++++ + GNK
Sbjct:   61 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNK 119

HSP 2 Score: 50.447 bits (119), Expect = 7.959e-18
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1

Query:  307 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            A+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +W    QE
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 65

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.031e-17
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQE 68

HSP 2 Score: 51.2174 bits (121), Expect = 1.031e-17
Identity = 29/90 (32.22%), Postives = 48/90 (53.33%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   + VYD+ + +SF N   W+  +     SDV  +++GNK  +  K    +E   KL     +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAK 153

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.032e-17
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGKT  + RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

HSP 2 Score: 53.1434 bits (126), Expect = 1.032e-17
Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEEGEAKLVSSCYV--YETSAR 736
            ++GQERFR++  +Y R +   ++VYD+ + +SF N   WV  +      DV  +++GNK     K     E   KL +S  +   ETSA+
Sbjct:   64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAK 153

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RAB8A_PONAB	6.103e-18	43.33	Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8...	[more]
YPT1_SCHPO	7.945e-18	43.33	GTP-binding protein ypt1 OS=Schizosaccharomyces po...	[more]
RAB1B_PIG	7.945e-18	40.00	Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ...	[more]
RAB35_RAT	7.945e-18	42.37	Ras-related protein Rab-35 OS=Rattus norvegicus GN...	[more]
RAB35_MOUSE	7.945e-18	42.37	Ras-related protein Rab-35 OS=Mus musculus GN=Rab3...	[more]
RAB35_HUMAN	7.945e-18	42.37	Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3...	[more]
RAB31_RAT	7.959e-18	44.07	Ras-related protein Rab-31 OS=Rattus norvegicus GN...	[more]
RAB31_MOUSE	7.959e-18	44.07	Ras-related protein Rab-31 OS=Mus musculus GN=Rab3...	[more]
RAB8_DISOM	1.031e-17	43.33	Ras-related protein Rab-8 OS=Discopyge ommata PE=2...	[more]
RAB8A_CHICK	1.032e-17	43.33	Ras-related protein Rab-8A OS=Gallus gallus GN=RAB...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT