FC931332 | Citrus Genome Database

Overview


Name	FC931332
Unique Name	FC931332
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	743

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.033e-17
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEE--GEAKLVSSCYVYETSAR 736
            ++GQERFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK+ L  +    ++   E       Y  ETSA+
Sbjct:   65 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 154

HSP 2 Score: 51.9878 bits (123), Expect = 1.033e-17
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+W    QE
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 69

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 1.033e-17
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEE--GEAKLVSSCYVYETSAR 736
            ++GQERFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK+ L  +    ++   E       Y  ETSA+
Sbjct:   65 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 154

HSP 2 Score: 51.9878 bits (123), Expect = 1.033e-17
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+W    QE
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 69

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.033e-17
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSFIEE--GEAKLVSSCYVYETSAR 736
            ++GQERFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK+ L  +    ++   E       Y  ETSA+
Sbjct:   65 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 154

HSP 2 Score: 51.9878 bits (123), Expect = 1.033e-17
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+W    QE
Sbjct:   10 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 69

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.033e-17
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQE 68

HSP 2 Score: 53.1434 bits (126), Expect = 1.033e-17
Identity = 25/65 (38.46%), Postives = 41/65 (63.08%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERF ++  SY R +   ++VYDV  ++S+ N  +W++E+      +V  +LVGNK  L TK
Sbjct:   64 TAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.033e-17
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQE 68

HSP 2 Score: 54.6842 bits (130), Expect = 1.033e-17
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTK 667
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W+ E+      +V  +LVGNK  L +K
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSK 128

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB21_RAT (Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.740e-17
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVS-SCYVYETSAR 736
            ++GQERF +L P Y RDS+ A++VYDV    SF     WV+E+R   G+++ + +VGNK+ L  +    I+E E+   S     Y TSA+
Sbjct:   73 TAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 162

HSP 2 Score: 46.595 bits (109), Expect = 1.740e-17
Identity = 21/60 (35.00%), Postives = 37/60 (61.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +W    QE
Sbjct:   18 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 77

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB21_MOUSE (Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4)

HSP 1 Score: 63.5438 bits (153), Expect = 1.740e-17
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVS-SCYVYETSAR 736
            ++GQERF +L P Y RDS+ A++VYDV    SF     WV+E+R   G+++ + +VGNK+ L  +    I+E E+   S     Y TSA+
Sbjct:   73 TAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 162

HSP 2 Score: 46.595 bits (109), Expect = 1.740e-17
Identity = 21/60 (35.00%), Postives = 37/60 (61.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +W    QE
Sbjct:   18 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 77

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB21_HUMAN (Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 2.261e-17
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVS-SCYVYETSAR 736
            ++GQERF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK+ L  +    I+E E+   S     Y TSA+
Sbjct:   75 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 164

HSP 2 Score: 46.595 bits (109), Expect = 2.261e-17
Identity = 21/60 (35.00%), Postives = 37/60 (61.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +W    QE
Sbjct:   20 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 79

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB21_CANFA (Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 2.263e-17
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVS-SCYVYETSAR 736
            ++GQERF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK+ L  +    I+E E+   S     Y TSA+
Sbjct:   73 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 162

HSP 2 Score: 46.595 bits (109), Expect = 2.263e-17
Identity = 21/60 (35.00%), Postives = 37/60 (61.67%), Query Frame = 1

Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +W    QE
Sbjct:   18 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 77

[Close]

BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.271e-17
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 2

Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVII-VLVGNKLILWTKGSFIEEG 688
            ++GQERFR+L PSY R +   + VYDV SR SF     W++EV T   +D II ++V NK+ +  +    EEG
Sbjct:   67 TAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLNHWMQEVDTYCTNDNIIKMMVANKIDMPNRVVTREEG 139

HSP 2 Score: 52.7582 bits (125), Expect = 2.271e-17
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1

Query:  304 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            S L   K++ +G+  VGK+S++ RF+ D FD    ATIG+DF   +M ++   V+L +W    QE
Sbjct:    7 SPLTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQE 71

The following BLAST results are available for this feature:

BLAST of FC931332 vs. ExPASy Swiss-Prot

BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RAB30_MOUSE	1.033e-17	34.44	Ras-related protein Rab-30 OS=Mus musculus GN=Rab3...	[more]
RAB30_HUMAN	1.033e-17	34.44	Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3...	[more]
RAB30_BOVIN	1.033e-17	34.44	Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ...	[more]
RAB1C_HUMAN	1.033e-17	40.00	Putative Ras-related protein Rab-1C OS=Homo sapien...	[more]
YPTC1_CHLRE	1.033e-17	38.33	GTP-binding protein YPTC1 OS=Chlamydomonas reinhar...	[more]
RAB21_RAT	1.740e-17	40.00	Ras-related protein Rab-21 OS=Rattus norvegicus GN...	[more]
RAB21_MOUSE	1.740e-17	40.00	Ras-related protein Rab-21 OS=Mus musculus GN=Rab2...	[more]
RAB21_HUMAN	2.261e-17	38.89	Ras-related protein Rab-21 OS=Homo sapiens GN=RAB2...	[more]
RAB21_CANFA	2.263e-17	38.89	Ras-related protein Rab-21 OS=Canis familiaris GN=...	[more]
RAB18_CAEEL	2.271e-17	43.84	Ras-related protein Rab-18 OS=Caenorhabditis elega...	[more]

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Properties


Property Name	Value
Genbank description	C34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT