FC931332

Overview
NameFC931332
Unique NameFC931332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931332_ssr120 microsatellite FC931332_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931332_ssr136 microsatellite FC931332_ssr136:136..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8311 contig Ccv1_Contig8311:55..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB12_MOUSE (Ras-related protein Rab-12 OS=Mus musculus GN=Rab12 PE=1 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 2.933e-17
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  280 RSEKMAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            R  K  P  A  K +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+W    QE
Sbjct:   29 RRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 101

HSP 2 Score: 51.2174 bits (121), Expect = 2.933e-17
Identity = 21/60 (35.00%), Postives = 38/60 (63.33%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKL 652
            ++GQERF S+  +Y R +   ++VYD+  +++F +  KW++ +      D  ++LVGNKL
Sbjct:   97 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 156
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 2.933e-17
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  280 RSEKMAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            R  K  P  A  K +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+W    QE
Sbjct:   30 RRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 102

HSP 2 Score: 51.2174 bits (121), Expect = 2.933e-17
Identity = 21/60 (35.00%), Postives = 38/60 (63.33%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKL 652
            ++GQERF S+  +Y R +   ++VYD+  +++F +  KW++ +      D  ++LVGNKL
Sbjct:   98 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 157
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB21_BOVIN (Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.942e-17
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNKLILWTKGSF-IEEGEAKLVS-SCYVYETSAR 736
            ++GQERF +L P Y RDS+ A++VYD+    SF     WV+E+R   G+++ + +VGNK+ L  +    I+E E+   S     Y TSA+
Sbjct:   72 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDLEKERHVSIQEAESYAESVGAKHYHTSAK 161

HSP 2 Score: 46.595 bits (109), Expect = 2.942e-17
Identity = 21/60 (35.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +W    QE
Sbjct:   17 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 76
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.951e-17
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++ +LVGNK+
Sbjct:   64 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 124

HSP 2 Score: 51.9878 bits (123), Expect = 2.951e-17
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +W    QE
Sbjct:    6 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.951e-17
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++ +LVGNK+
Sbjct:   64 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 124

HSP 2 Score: 51.9878 bits (123), Expect = 2.951e-17
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +W    QE
Sbjct:    6 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 2.951e-17
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++ +LVGNK+
Sbjct:   64 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 124

HSP 2 Score: 51.9878 bits (123), Expect = 2.951e-17
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +W    QE
Sbjct:    6 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.951e-17
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++ +LVGNK+
Sbjct:   64 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 124

HSP 2 Score: 51.9878 bits (123), Expect = 2.951e-17
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +W    QE
Sbjct:    6 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.951e-17
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++ +LVGNK+
Sbjct:   64 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVKMLVGNKI 124

HSP 2 Score: 51.9878 bits (123), Expect = 2.951e-17
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +W    QE
Sbjct:    6 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.951e-17
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTE-RGSDVIIVLVGNKL 652
            ++GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    +D++ +LVGNK+
Sbjct:   64 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 124

HSP 2 Score: 51.9878 bits (123), Expect = 2.951e-17
Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  310 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +W    QE
Sbjct:    6 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
[Close]
BLAST of FC931332 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.952e-17
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  319 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWTREIQE 498
            +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ + ++LQ+W    QE
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQE 68

HSP 2 Score: 53.1434 bits (126), Expect = 2.952e-17
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:  473 SSGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWVEEVRTERGSDVIIVLVGNK 649
            ++GQERFR++  SY R +   ++VYDV  ++SF N  +W+ E+      +V  +LVGNK
Sbjct:   64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNK 122
The following BLAST results are available for this feature:
BLAST of FC931332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
RAB12_MOUSE2.933e-1738.36Ras-related protein Rab-12 OS=Mus musculus GN=Rab1... [more]
RAB12_HUMAN2.933e-1738.36Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
RAB21_BOVIN2.942e-1738.89Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 ... [more]
RAB18_RAT2.951e-1742.62Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB2.951e-1742.62Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE2.951e-1742.62Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN2.951e-1742.62Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_CHICK2.951e-1742.62Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_BOVIN2.951e-1742.62Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
YPTV1_VOLCA2.952e-1738.33GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]

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Properties
Property NameValue
Genbank descriptionC34104A03EF PostHarvP1 Citrus clementina cDNA clone C34104A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931332 ID=FC931332; Name=FC931332; organism=Citrus clementina; type=EST; length=743bp
ACATGGTGAGAGGCTCGCTCTGCCAGAGCCACTGAGCCAGAGCCAGCGCC
AGCGCCCGCGCACGCGTGCAGAAAATTCGTACATACACACACCTGCAGAG
AATTACTTCTATTCTATGCATAAATAAATAAAGGGGGCAGGCAGGCAGGC
AGGCAGGCATCAAAGGCAAATCCCGAAAATCCGAGGCCCCCGAGATCTCG
TCCTCCATCTCCTTCTCTCCGTTGAATACACCCGGCCGAGATCTCGTGTA
ATTGCACCAAAACTGTTGATTTTTGTTGTAGATCCGAAAAAATGGCTCCG
GTTTCAGCTCTAGCCAAGTACAAGTTGGTGTTTTTAGGGGATCAGTCCGT
GGGCAAAACTAGTATCATCACTCGCTTCATGTACGATAAATTCGACAACA
CTTATCAGGCTACCATTGGTATCGATTTCCTGTCGAAGACAATGTATCTT
GAAGACCGAACGGTTCGTTTGCAGCTCTGGACAAGAGAGATTCAGGAGTC
TCATTCCTAGCTACATCAGAGATTCCTCTGTCGCAGTCATTGTATATGAT
GTTGCAAGTAGGCAGTCTTTCCTAAACACCACCAAGTGGGTTGAAGAGGT
TCGAACTGAGCGGGGCAGTGATGTAATCATTGTCCTTGTTGGGAACAAAC
TGATCTTGTGGACAAAAGGCAGTTTCATAGAGGAGGGAGAGGCTAAGCTC
GTGAGCTCATGTTATGTTTATGAGACTAGTGCCAGGCTGGCTT
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